PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02348.1.p
Common NameEUGRSUZ_J02348
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 331aa    MW: 36955.3 Da    PI: 8.7641
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02348.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.51.1e-151453645
                      HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      +  r +t+ kR++g++KKA+E  +LC+++ +++i+++ g 
  Eucgr.J02348.1.p 14 EKARRITYEKRKKGLMKKAQEFTTLCGVDTCMVIYGPAGS 53
                      66799********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.941152IPR002100Transcription factor, MADS-box
CDDcd002661.45E-21287No hitNo description
SuperFamilySSF554551.96E-18295IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-161153IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRGKLALEL IPKEKARRIT YEKRKKGLMK KAQEFTTLCG VDTCMVIYGP AGSTATTEPE  60
VWPASPEKVK LVIERYRSEG ADRRAKRTIG LPEFFANRKR KVDAELAKAR LANWEAKLLG  120
SLGHKLEVAK ARLAVMKEDA MRRSSSHVYD HHIHANDHVY HPHHMQGMFQ DHIMPVPMKQ  180
SPTDVKPHLD LPYHMMQQQQ QQPLFEPDCL NSSIPMPSEW WAQKNQYLNH IPPVPSGCGG  240
TALVNNFHHS VSYPTMQNYQ FATLEGMMLS EMSAYGPHHR EHVAGRHCLE LCGVLQQHAV  300
GPASPATGAP LSDAGRSNPD PDEAGFHAVS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11225KEKARRITYEKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02348.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034675.10.0PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A059AHB60.0A0A059AHB6_EUCGR; Uncharacterized protein
STRINGXP_010034675.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-24M-type_MADS family protein