PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02392.1.p
Common NameEUGRSUZ_J02392
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 160aa    MW: 17582.3 Da    PI: 11.259
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02392.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.41.1e-1974107134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs+Cg+ kTp+WR gp+g ktLCnaCG+++++ +
  Eucgr.J02392.1.p  74 CSHCGVQKTPQWRAGPNGAKTLCNACGVRFKSGR 107
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.13668104IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-1668122IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-1469130No hitNo description
Gene3DG3DSA:3.30.50.101.4E-1572106IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.46E-1473121No hitNo description
PROSITE patternPS0034407499IPR000679Zinc finger, GATA-type
PfamPF003201.4E-1774107IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MVPGRPVSRR VVLELFVLDD GLVALARQPL VRARARLRGS SQLQAEPWED KPPMKKQKSK  60
PAAASETAGP ARRCSHCGVQ KTPQWRAGPN GAKTLCNACG VRFKSGRLYP EYRPACSPTF  120
SSELHSNHHR KVLEMRRKKE SMTTTALGQP EPGRAVPSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02392.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487835.12e-48PREDICTED: GATA transcription factor 5-like, partial
RefseqXP_017627216.11e-48PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH576e-46GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A059AGC61e-112A0A059AGC6_EUCGR; Uncharacterized protein
STRINGXP_010033458.11e-72(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-48GATA transcription factor 5