PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J02884.1.p

Common Name

EUGRSUZ_J02884, LOC104423038

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 249aa MW: 26556.3 Da PI: 8.5981

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J02884.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.7	7.1e-40	19	78	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++lkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rk k+ Eucgr.J02884.1.p 19 EQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNIPVGGGTRKTAKR 78 57899***************************************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	14	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	21	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.339	23	77	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	25	61	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MQQDPSSLFQ PTTRPQFPEQ EQLKCPRCDS TNTKFCYYNN YNLSQPRHFC KSCRRYWTKG 60 GALRNIPVGG GTRKTAKRAS SKSKRHNAGS GSDAGADHPQ APGSSQAHSR TTEEASQSPP 120 PGFVGPTLDL DPARFYGSPS DLERRMLDVN GSFSSLLGTS GPFLSILEGP NLNASGASSM 180 VRFGGLGDEV KPGHGHVPGS AREPGAAADG AENFMDIQNG DAGCWTGGSG WPDLASIPRV 240 RVFPDRER*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J02884.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028132	2e-53	AB028132.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-8.
GenBank	AK061000	2e-53	AK061000.1 Oryza sativa Japonica Group cDNA clone:006-203-F09, full insert sequence.
GenBank	AK100892	2e-53	AK100892.1 Oryza sativa Japonica Group cDNA clone:J023130J11, full insert sequence.
GenBank	AK101321	2e-53	AK101321.1 Oryza sativa Japonica Group cDNA clone:J033034E07, full insert sequence.
GenBank	AP005284	2e-53	AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12.
GenBank	AP014958	2e-53	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	2e-53	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBank	GQ183532	2e-53	GQ183532.1 Oryza sativa Japonica Group Dof-type zinc finger protein 05 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010033797.1	0.0	PREDICTED: dof zinc finger protein DOF3.1
Swissprot	O82155	3e-40	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A059AHV0	0.0	A0A059AHV0_EUCGR; Uncharacterized protein
STRING	XP_010033797.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-37	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Eucgr.J02884.1.p
Entrez Gene	104423038

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]