PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02947.1.p
Common NameEUGRSUZ_J02947, LOC104423083
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 350aa    MW: 37906.3 Da    PI: 6.783
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02947.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.7e-17237271135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C +C + kTp+WR gp g+ktLCnaCG+++++ +l
  Eucgr.J02947.1.p 237 CLHCASEKTPQWRTGPMGPKTLCNACGVRFKSGRL 271
                       99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-7515324IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.161231267IPR000679Zinc finger, GATA-type
SMARTSM004015.0E-17231281IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-14232294No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13235269IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.00E-12236283No hitNo description
PfamPF003201.4E-14237271IPR000679Zinc finger, GATA-type
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MKMEVSEYFV GGYPGEFSPE KKGGEQFAVD DLLDFSNEDA AMMTAADGFF DGVGTNSADS  60
STVTAVDSSC NSSISCGDNT LSGSFGSRSF GDSSFAGELC VPYDDLAELE WLSNFVEDSF  120
STKQNLQQPL HFIPGSKTPT PESSCSDALA RPELLDLKPA PANAAANGAD ANAGPSIFLP  180
ETPLPSKSRS KRSRAAPCDW TTRLLHLSPV KPPKTAPASM KKREGPDGDP DSVPRRCLHC  240
ASEKTPQWRT GPMGPKTLCN ACGVRFKSGR LVPEYRPAAS PTFVSAKHSN SHRKVLELRR  300
QKELHRPHHH HHHHQPQQYF GQSPMFGMSA GADEFLINHC DGPAYRHMI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02947.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033845.10.0PREDICTED: GATA transcription factor 12
TrEMBLA0A059AJU10.0A0A059AJU1_EUCGR; GATA transcription factor
STRINGXP_010033845.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-65GATA transcription factor 9