PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02994.1.p
Common NameEUGRSUZ_J02994, LOC104423121
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 405aa    MW: 45959.8 Da    PI: 4.2974
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02994.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix483.3e-15169253286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       Wt++e+ +L++a  e+  + +r++l+   W+ev++k++e  ++ r+  qC+++++ l+k+ykk+k+   + t + ss+++yf++++
  Eucgr.J02994.1.p 169 WTEHETFVLLDAWGERFLQRGRKSLRSDEWQEVAEKVAEvSKVDRTESQCRNRLDTLKKKYKKEKAKFVE-TGGLSSKWVYFKKMD 253
                       *************************************762678************************998.577888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-21168255No hitNo description
Gene3DG3DSA:1.10.10.608.6E-4169233IPR009057Homeodomain-like
PROSITE profilePS500906.47169226IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDHAEDDAGY PPNSHGANQS QEYGSSNSQK LPGGTPPYPK PVSNQFVDDE DEDDGDEEDE  60
EEELGDEEDD KDQMNGNRQT VKNVEDEDDD DEDNDEDDFS DDDDDDDDDQ QKNQARRAND  120
PERRPKRRKL KSLVSSYEFA PRVPPPQDVP PPVAKPLPPT GGRNSLMDWT EHETFVLLDA  180
WGERFLQRGR KSLRSDEWQE VAEKVAEVSK VDRTESQCRN RLDTLKKKYK KEKAKFVETG  240
GLSSKWVYFK KMDMLMSSSP SQQTALSCGV DSGEYVFMNP RVYLNRANGM DEMRDSPGNS  300
ESSDKEGDDS DGLPPKKRKS GRESSDGASI KLLAESVTKF SKIYEKIENS KRQQMVELEK  360
MRMDFQRDLE VQRKQIMERA QAEIARIRQG DDGENDLSTE NASG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115129RRANDPERRPKRRKL
2122129RRPKRRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02994.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033886.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A059AJ020.0A0A059AJ02_EUCGR; Uncharacterized protein
STRINGXP_010033886.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15605916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-69Trihelix family protein