PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J03074.1.p
Common NameEUGRSUZ_J03074
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 405aa    MW: 46582 Da    PI: 6.5694
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J03074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.76e-2134116290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       fY+ YAke GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +      +r+etr+gC a++k +++++ +w+++++eleHnH ++
  Eucgr.J03074.1.p  34 FYSCYAKEHGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----LPRPETRIGCPAMIKFRLMDNTRWRIIEVELEHNHLIS 116
                       9***************99997.66779**************99888.....9**********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-1834116IPR004330FAR1 DNA binding domain
PfamPF105512.0E-20183269IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MTGLVGQTSV IQGENSMPPA VGMEFESYED VYYFYSCYAK EHGFGVRVSN TWYRKSKERY  60
RGKLSCSSAG FKKKSEANLP RPETRIGCPA MIKFRLMDNT RWRIIEVELE HNHLISPTSP  120
EEVETVKLFQ TVIIDAEGGK LAADDAHGSN FFYVADLNER GCLRNLFWAA ARSRVAYRYF  180
GDVVAIDTTF FGQEFDNLPV SFIGVNHHGQ PVLLGCGLLA GETVESYVWL LRAWLTCILG  240
HPPQTIISDQ CKALQAAIFD VFPRASHCMD VTKVMRRISE RLEKTYQYET IKAAIYRAVC  300
LSQRAEEFEA AWMDIIHEHG LEDHQWFQSL YEERNQWVPV NLKETFLAGM FRTPLTIRQN  360
EDATSFFKGY IGNYTSLKEF LDKCDQAMQK SHQLDRSLDF FPRIH
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J03074.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033973.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A059AKA60.0A0A059AKA6_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010033973.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-116FAR1-related sequence 6