PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J03078.1.p
Common NameEUGRSUZ_J03078
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 503aa    MW: 57109.8 Da    PI: 8.8677
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J03078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.48.7e-2260143189
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       ++Yn YAke+GF+vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w+v ++ leHnH l
  Eucgr.J03078.1.p  60 NYYNCYAKEAGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHNHLL 143
                       69*****************************************9988.....99*********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1960143IPR004330FAR1 DNA binding domain
PfamPF105515.9E-30262355IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEDAPLPSEQ GNDGECSTSQ RGPDGIAAAS DDQNGASVGR KEFVAPAVGM EFESYDDAYN  60
YYNCYAKEAG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI  120
RMRLVDSKRW RVLEVTLEHN HLLGLKSYRT IKKMSAGTKR KSQSSADAEE RTIKLYRALV  180
IDAGGNGNQS CGENEARSLS DHLNHLNLKK GDTQAIYNYF CRMQLTNPNF YYLMDLTDEG  240
NLRNVFWADA RSRAACVYFG DVIYFDTTFL SNKYEVPLVA FVGANHHGQS VLLGCGLLAG  300
ETMESYTWVF KAWSSCMSGC SPQTITTDRC KILRGAIEEV FPRCHHRFGL SHIMRKVPEK  360
LGGLNNYDAI RRALTKAVYE FLKVSEFETA WGIMVQRFGI GDHEWLRALY EDRVIWAPVY  420
LKDTFFAGMS SARPGESLNA FFDKYVHKQT PLKEFLDKYE LALQKKHREE ALADNESRNA  480
SHGLKTRCSF ELQLSKARPM RS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J03078.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033975.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A059AJ320.0A0A059AJ32_EUCGR; Uncharacterized protein
STRINGXP_010033975.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107882531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]