PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J03166.1.p
Common NameEUGRSUZ_J03166, LOC104423265
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 286aa    MW: 31048.1 Da    PI: 6.5076
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J03166.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.1e-17219255135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Eucgr.J03166.1.p 219 CHHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 255
                       *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.3E-1076111IPR010399Tify domain
PROSITE profilePS5132014.86476111IPR010399Tify domain
PfamPF062001.0E-1281110IPR010399Tify domain
PROSITE profilePS5101713.205143185IPR010402CCT domain
PfamPF062031.7E-15143185IPR010402CCT domain
PROSITE profilePS501149.011213270IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-13213266IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-13214265No hitNo description
Gene3DG3DSA:3.30.50.105.0E-16218260IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440219246IPR000679Zinc finger, GATA-type
CDDcd002023.02E-14219268No hitNo description
PfamPF003201.1E-14219255IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDGSHGGDDG MDGGDPTHDR HPMQPHYRHH HGLQAQPHLS NGNDMNDDHD HDGGGGEGVE  60
GDVPSDAGND SDNRGGGDDA DQLTLSFQGQ VYVFDSVPPQ KVQAVLLLLG AREVTPNPPA  120
IPVATNQNQD LMGTPQRSNV PQRLASLIRF REKKKERNFD KKIRYAVRKE VALRMQRNKG  180
QFSSSKPNND ESSSAVTTWE SNQSWGPESN GSPHQEILCH HCGISEKSTP MMRRGPEGPR  240
TLCNACGLMW ANKGTLRDLS KAAHPGVQVS SLNRNEMQSA NLGAD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J03166.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034076.10.0PREDICTED: GATA transcription factor 28 isoform X1
SwissprotQ8H1G01e-110GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A059AJ010.0A0A059AJ01_EUCGR; Uncharacterized protein
STRINGXP_010034076.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.27e-90ZIM-LIKE 2