PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00122.1.p
Common NameEUGRSUZ_K00122
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 179aa    MW: 20332.1 Da    PI: 10.4448
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00122.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.6e-1397142247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++W+ eE+  ++++ k+lG+g+W+ I++ +  +Rt+ q+ s+ qky
  Eucgr.K00122.1.p  97 KPWSMEEHVTFLEGLKRLGKGDWRGISKNFVPTRTPTQVASHAQKY 142
                       58*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-1290146IPR009057Homeodomain-like
PROSITE profilePS5129416.99791147IPR017930Myb domain
SuperFamilySSF466891.12E-1593146IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-1594146IPR006447Myb domain, plants
SMARTSM007176.7E-995145IPR001005SANT/Myb domain
PfamPF002493.2E-1197142IPR001005SANT/Myb domain
CDDcd001674.43E-898143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MVKEAVTCGG RKCSHCGYNG HNSRTCNGKG CVKLFGVYVS ENSRASMKKS LSVENMRSSS  60
CNKSSELAVV DPRGYLSDDP NHHSQEAKAA RERKKGKPWS MEEHVTFLEG LKRLGKGDWR  120
GISKNFVPTR TPTQVASHAQ KYFLRQVIND KKKRRTSMFD LHSQDHDHKY WRRIYPIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150154KKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00122.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038261.26e-65PREDICTED: uncharacterized protein LOC18605280 isoform X2
RefseqXP_007038262.26e-65PREDICTED: uncharacterized protein LOC18605280 isoform X1
SwissprotQ9FKF93e-56M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A058ZWP61e-131A0A058ZWP6_EUCGR; Uncharacterized protein
STRINGEOY227626e-64(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-53MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]