PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00126.1.p
Common NameEUGRSUZ_K00126, LOC104424314
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 285aa    MW: 30225.9 Da    PI: 8.9256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00126.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.4e-20120170255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp+     +r++lg+f+ta eAaka+++a+ +l+g
  Eucgr.K00126.1.p 120 HYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDTAVEAAKAYDRAAFRLRG 170
                       8********.**********8542..4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-32119179IPR001471AP2/ERF domain
CDDcd000182.27E-30119178No hitNo description
PfamPF008477.5E-14120170IPR001471AP2/ERF domain
PROSITE profilePS5103224.526120178IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-23120179IPR016177DNA-binding domain
SMARTSM003801.6E-37120184IPR001471AP2/ERF domain
PRINTSPR003671.2E-10121132IPR001471AP2/ERF domain
PRINTSPR003671.2E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MASTQQQSST LELIRQHLLI DFSSVDTFLT SLDACTSKVA PAPAAASSPS SGSNSPQTSF  60
SFQPNPAPLP PKPPKPSSST LSSRRPAIQV AVPAATSFLA APAVPRAEPS GSAGGDDDKH  120
YRGVRRRPWG KFAAEIRDPT RKGTRVWLGT FDTAVEAAKA YDRAAFRLRG SKAILNFPLE  180
AGRDEPTSTE PSLAPADASR KRAREEAAAE SAESEMSAGG CYKVVKKEQH ADVASGRDTC  240
PLTPSSWRGF WDIGEGNKES IFSVPPLSPL SPHPCFGYSQ LMVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-30119185470ATERF1
3gcc_A4e-30119185470ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00126.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034985.10.0PREDICTED: ethylene-responsive transcription factor ERF105
TrEMBLA0A058ZXZ20.0A0A058ZXZ2_EUCGR; Uncharacterized protein
STRINGXP_010034985.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-48ERF family protein