PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K00165.1.p

Common Name

EUGRSUZ_K00165

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 261aa MW: 28577.9 Da PI: 9.5748

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K00165.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	6	27	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+++Fs+ + H+r+H Eucgr.K00165.1.p 6 VCKICNRRFSNGKAMGGHMRSH 27 6*******************99 PP
2	zf-C2H2	14.1	0.00013	209	231	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k+F + L H ++H Eucgr.K00165.1.p 209 FECPYCHKVFDSGQALGGHKKVH 231 89**********99999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.1	5	27	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.034	5	32	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.6E-8	6	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.08E-7	6	27	No hit	No description
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.08E-7	164	191	No hit	No description
Pfam	PF13912	1.3E-10	169	193	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.098	169	191	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.076	169	196	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	171	191	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.9E-11	208	231	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.4E-5	208	233	No hit	No description
SMART	SM00355	0.018	209	231	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.076	209	231	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	211	231	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MERNRVCKIC NRRFSNGKAM GGHMRSHFAK LPPRLPLPQP TPTPTPSSSL SLSPQRLHQG 60 KPQTPAAVHD RGSDTESSRR RKRNRSKRWG RAVGADALLN ADVEQAISSV SETETLSEAD 120 GALCLMMLSR GKWPKRSSAE TDGHEEDDGD DSVSVTQMNG RAGSSRPKYR CETCNKGFGS 180 YQALGGHRAS HKKTSEENLI GHNHKRLAFE CPYCHKVFDS GQALGGHKKV HNEAITVTAK 240 SKNCDAGESL IDLNLPAPEE N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	87	RNRSKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K00165.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010038418.1	0.0	PREDICTED: zinc finger protein ZAT1
TrEMBL	A0A058ZY51	0.0	A0A058ZY51_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010038418.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1465	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-30	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Eucgr.K00165.1.p