PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00198.1.p
Common NameEUGRSUZ_K00198
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 22040.1 Da    PI: 9.4636
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00198.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.2e-27245851
                      HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+ly +ss
  Eucgr.K00198.1.p  2 SRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYKFSS 45
                      59****************************************96 PP
2K-box67.35.3e-23711571197
             K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       e+    l+qe + ++++ie L+ ++R+l G++L+s+s+ ++q++ +qLe+sl++i+++K +ll +qi++lq ke++l+een +L +k
  Eucgr.K00198.1.p  71 EQYILCLKQETTDMERKIELLEVSLRKLSGQCLGSCSMDQIQEIGDQLERSLSSIKERKAQLLNDQIQQLQAKERSLKEENAKLLAK 157
                       55566789****************************************************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.978147IPR002100Transcription factor, MADS-box
PfamPF003196.4E-24243IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-22246IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-25262IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-18924IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-182445IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.39774164IPR002487Transcription factor, K-box
PfamPF014864.1E-2177158IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSRQVTFSKR RNGLLKKAYE LSVLCDAEVA VIIFSQKGRL YKFSSNSEIQ KTIDRYRRST  60
NDAATYQANM EQYILCLKQE TTDMERKIEL LEVSLRKLSG QCLGSCSMDQ IQEIGDQLER  120
SLSSIKERKA QLLNDQIQQL QAKERSLKEE NAKLLAKCLA NPGQSTAHLR ATTIHSRSSR  180
STDGETGLFI GLAQS*
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00198.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2638080.0AY263808.1 Eucalyptus grandis SOC1-like floral activator MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720706.11e-140PREDICTED: LOW QUALITY PROTEIN: MADS-box protein AGL42
SwissprotQ9FIS11e-61AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A058ZY081e-139A0A058ZY08_EUCGR; Uncharacterized protein
STRINGXP_010038422.11e-139(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.34e-64AGAMOUS-like 42