PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00202.5.p
Common NameEUGRSUZ_K00202, LOC104424375
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 23849.3 Da    PI: 10.466
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00202.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.53.6e-281059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rien + rqvtfskRr g+lKKA+ELSvLCdaeva iifs++g+lye+ss
  Eucgr.K00202.5.p 10 RIENVTSRQVTFSKRRPGLLKKAYELSVLCDAEVATIIFSQKGRLYEFSS 59
                      8***********************************************96 PP
2K-box73.46.7e-2583171997
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       + +++  +l+qe ++++++ie L+ ++R+l G++L+s+s+ e+q++ +qLe+sl++iR++K +l+ +qi++lq ke++l+een +L +k
  Eucgr.K00202.5.p  83 NIKQNILRLKQETTNMERKIELLEVSLRKLSGQCLGSCSMDEIQEIGDQLERSLSSIRERKAQLFNDQIRQLQAKERSLKEENAKLLAK 171
                       456788899*****************************************************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.132161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-30375IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-29323IPR002100Transcription factor, MADS-box
CDDcd002658.65E-37379No hitNo description
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.68688178IPR002487Transcription factor, K-box
PfamPF014869.8E-2390172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVRGKVQMRR IENVTSRQVT FSKRRPGLLK KAYELSVLCD AEVATIIFSQ KGRLYEFSSN  60
SEIRKTIDRY RRSTNDAATY QANIKQNILR LKQETTNMER KIELLEVSLR KLSGQCLGSC  120
SMDEIQEIGD QLERSLSSIR ERKAQLFNDQ IRQLQAKERS LKEENAKLLA KCLANPGQST  180
THPRATTIHS QSSPSTDGET RLFIGLPKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-16170169MEF2C
5f28_B1e-16170169MEF2C
5f28_C1e-16170169MEF2C
5f28_D1e-16170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00202.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2638080.0AY263808.1 Eucalyptus grandis SOC1-like floral activator MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035071.11e-152PREDICTED: MADS-box protein AGL42 isoform X2
SwissprotQ9FIS19e-74AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A058ZX051e-151A0A058ZX05_EUCGR; Uncharacterized protein
STRINGXP_010035071.11e-151(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.34e-76AGAMOUS-like 42