PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00207.2.p
Common NameEUGRSUZ_K00207
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 23821.1 Da    PI: 10.1781
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00207.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.54.9e-301059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rien + rqvtfskRr+g+lKKA+ELSvLC+aevaviifs++gklye+ss
  Eucgr.K00207.2.p 10 RIENATSRQVTFSKRRKGLLKKAYELSVLCEAEVAVIIFSQNGKLYEFSS 59
                      8***********************************************96 PP
2K-box69.97.9e-24851711298
             K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       +   +l+qe + ++++ie L+ +q +l G++L+s+s++e+q++ +qLe+sl++iR++K +l+ +qi++lq ke+ l+een +L +k+
  Eucgr.K00207.2.p  85 RYILHLKQETTDMERKIELLEVSQQKLSGQCLGSCSINEIQEIGDQLEQSLSSIRKRKAQLFNDQIQQLQAKERHLKEENAKLLAKF 171
                       445689*****************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.188161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-39160IPR002100Transcription factor, MADS-box
CDDcd002659.56E-37277No hitNo description
SuperFamilySSF554558.63E-33391IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.79687177IPR002487Transcription factor, K-box
PfamPF014861.6E-2289170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MARGKTKMRR IENATSRQVT FSKRRKGLLK KAYELSVLCE AEVAVIIFSQ NGKLYEFSSN  60
SEIRKTIDRY RRSTNVDTYQ ANVERYILHL KQETTDMERK IELLEVSQQK LSGQCLGSCS  120
INEIQEIGDQ LEQSLSSIRK RKAQLFNDQI QQLQAKERHL KEENAKLLAK FLANPWQSTA  180
HPRAAAINSR SSRGTDVETG LFIGLPES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16170169MEF2C
5f28_B2e-16170169MEF2C
5f28_C2e-16170169MEF2C
5f28_D2e-16170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00207.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2638070.0AY263807.1 Eucalyptus grandis SOC1-like floral activator MADS3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035075.11e-147PREDICTED: MADS-box protein SOC1-like isoform X1
SwissprotQ9FIS11e-69AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A058ZX171e-151A0A058ZX17_EUCGR; Uncharacterized protein
STRINGXP_010035075.11e-147(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.35e-72AGAMOUS-like 42