PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00321.1.p
Common NameEUGRSUZ_K00321
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 326aa    MW: 35682.5 Da    PI: 4.261
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00321.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-1989138255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Eucgr.K00321.1.p  89 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 138
                       89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-3088146IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2289146IPR016177DNA-binding domain
PfamPF008478.2E-1389138IPR001471AP2/ERF domain
CDDcd000181.79E-3189146No hitNo description
PROSITE profilePS5103223.94789146IPR001471AP2/ERF domain
SMARTSM003801.1E-3889152IPR001471AP2/ERF domain
PRINTSPR003673.4E-1090101IPR001471AP2/ERF domain
PRINTSPR003673.4E-10112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDDCFFNPVK YTEHRTVTRK LTRAARKSFP PAPTRRYVHE ISVEPASRGG GALQAASISR  60
KRPSLADPQV PRRPLKAAAM EAATGSGRKF RGVRQRPWGK WAAEIRDPAR RVRLWLGTYD  120
TAEEAAMVYD NAAIKLRGPD ALTNFATPLK EAAVTDDVDA DIEEVAAEDN INTAACGYDS  180
GDDSRNLSSP TSVLHFRTQS GEEAEPAGPA PQVEPAEPVR EEPGTSKPAA EEEVQECQGE  240
TGEFAPLDLP FLDDFFNFDP PESTLFDETT IGTFSDRLLA EDFMSDIFVD RPEDFGSLSP  300
MDMCQADDYF QDIGDLFASD PLVAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2086150265ATERF1
3gcc_A3e-2086150265ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00321.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035200.10.0PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLA0A058ZXH70.0A0A058ZXH7_EUCGR; Uncharacterized protein
STRINGXP_010035200.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-45cytokinin response factor 4