PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K01039.1.p

Common Name

EUGRSUZ_K01039, LOC104427258

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 216aa MW: 24183.6 Da PI: 8.4836

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K01039.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.7e-11	23	76	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 rr+ +++E++RR+r+++ ++ L +llP+ + +++ s + +A++YIk L+ Eucgr.K01039.1.p 23 RRTERKIIEKNRRNRMKHLYSVLNSLLPSqP---SDQEaRSLPDQIDEAIKYIKGLE 76 79999**********************76...66666*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.84E-11	20	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.20E-6	20	80	No hit	No description
PROSITE profile	PS50888	12.538	22	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-7	23	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-9	23	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-5	28	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MALSLVNIIG KEMERGLQPS TSRRTERKII EKNRRNRMKH LYSVLNSLLP SQPSDQEARS 60 LPDQIDEAIK YIKGLETAVK EAKDKKENRM GKKRPSPSTS SSTLEAVKSP QIEIRVRDSS 120 LEVILTSGLH DQFIFSEILR MLHEEEVEVM NANFSVVGNS VYHLVHAKIG ESSLGAAMIS 180 ERLKTFVNGS AADGGHEEFH PKLWDCGLSP NIWNF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K01039.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010038678.1	1e-158	PREDICTED: uncharacterized protein LOC104427258
TrEMBL	A0A059A0H1	1e-157	A0A059A0H1_EUCGR; Uncharacterized protein
STRING	XP_010038678.1	1e-157	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	5e-31	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.K01039.1.p
Entrez Gene	104427258