PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01046.2.p
Common NameEUGRSUZ_K01046
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 190aa    MW: 21075.6 Da    PI: 9.2226
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01046.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.24.3e-4270145277
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       Cq+e+C+adl+ea++yhrrhkvCe+h+kap+v+v gl qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk+ 
  Eucgr.K01046.2.p  70 CQAEKCTADLTEARQYHRRHKVCEQHAKAPAVVVGGLYQRFCQQCSRFHELLEFDENKRSCRRRLAGHNERRRKNP 145
                       **************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.1E-3167131IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.12967144IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-3869148IPR004333Transcription factor, SBP-box
PfamPF031107.8E-3270143IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEKGKHRAFL EEKLKAEPAA ECEDGPGGGD GEDDDDSKRK KVPPSSGSRR GSGKSKIPVL  60
GTCCAASRNC QAEKCTADLT EARQYHRRHK VCEQHAKAPA VVVGGLYQRF CQQCSRFHEL  120
LEFDENKRSC RRRLAGHNER RRKNPAEPHI EGSSGKAGGS TQMKELVCGQ VDNRGRIQEN  180
ATYKHFQIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-3668143984squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01046.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035775.11e-111PREDICTED: squamosa promoter-binding protein 1
TrEMBLA0A059A0B61e-136A0A059A0B6_EUCGR; Uncharacterized protein
STRINGXP_010035775.11e-111(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.12e-41squamosa promoter binding protein-like 5