PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K01046.3.p

Common Name

EUGRSUZ_K01046, LOC104424934

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

SBP

Protein Properties

Length: 179aa MW: 19945.2 Da PI: 9.1634

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K01046.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.4	3.7e-42	59	134	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+e+C+adl+ea++yhrrhkvCe+h+kap+v+v gl qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk+ Eucgr.K01046.3.p 59 CQAEKCTADLTEARQYHRRHKVCEQHAKAPAVVVGGLYQRFCQQCSRFHELLEFDENKRSCRRRLAGHNERRRKNP 134 **************************************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.5E-33	52	120	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.129	56	133	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-38	58	137	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.8E-32	59	132	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MEKGKHRAFL EEKLKAEPAA ECEDGPGGGD GEDDDDSKRK KVPPSSGSRR GSGAASRNCQ 60 AEKCTADLTE ARQYHRRHKV CEQHAKAPAV VVGGLYQRFC QQCSRFHELL EFDENKRSCR 120 RRLAGHNERR RKNPAEPHIE GSSGKAGGST QMKELVCGQV DNRGRIQENA TYKHFQIR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-36	51	132	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00634	PBM	Transfer from PK22320.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K01046.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010035775.1	1e-129	PREDICTED: squamosa promoter-binding protein 1
Swissprot	Q38741	1e-42	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A059A0I2	1e-127	A0A059A0I2_EUCGR; Uncharacterized protein
STRING	XP_010035775.1	1e-128	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	3e-41	squamosa promoter binding protein-like 5

Link Out ? help Back to Top
Phytozome	Eucgr.K01046.3.p
Entrez Gene	104424934

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]