PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01046.4.p
Common NameEUGRSUZ_K01046
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 131aa    MW: 14016.8 Da    PI: 8.5905
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01046.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP77.42.2e-2459105248
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                       Cq+e+C+adl+ea++yhrrhkvCe+h+kap+v+v gl qrfCqqCsr
  Eucgr.K01046.4.p  59 CQAEKCTADLTEARQYHRRHKVCEQHAKAPAVVVGGLYQRFCQQCSR 105
                       **********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-2352105IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.18756130IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.16E-2258106IPR004333Transcription factor, SBP-box
PfamPF031101.1E-1859106IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MEKGKHRAFL EEKLKAEPAA ECEDGPGGGD GEDDDDSKRK KVPPSSGSRR GSGAASRNCQ  60
AEKCTADLTE ARQYHRRHKV CEQHAKAPAV VVGGLYQRFC QQCSRSGPIL FAILSVSAIA  120
SCRVVSCRVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-1851105157squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01046.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035775.12e-57PREDICTED: squamosa promoter-binding protein 1
SwissprotQ387413e-23SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A059A1M43e-89A0A059A1M4_EUCGR; Uncharacterized protein
STRINGXP_010035775.18e-57(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-20squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]