PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K01089.1.p

Common Name

EUGRSUZ_K01089, LOC104424977

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

TCP

Protein Properties

Length: 359aa MW: 39055.3 Da PI: 7.9236

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K01089.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.8	1.2e-35	22	138	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssss 81 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++ s + s Eucgr.K01089.1.p 22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDKLAELppwqpnsssvpstS----------TAPDS 104 79**************************************************************87554443332221..........11111 PP TCP 82 asnsssg..........................k 89 a++++++ + Eucgr.K01089.1.p 105 AAHNGNSaemavaeesespkynfqlhrqisansR 138 1111111122222222223333333333333321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.7E-31	22	136	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.281	24	82	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MGMKSTEGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKAAID KLAELPPWQP NSSSVPSTST APDSAAHNGN SAEMAVAEES 120 ESPKYNFQLH RQISANSRNA TSQFLPPQLE NDQSMLETMK SFFPTSSAAS SINFSSYPSE 180 IMSRSTQQNQ DLGLSLHSLQ SQSALIHQSD PQENEMSQTL FSTSAPMVYE PGFQRMMGWG 240 TDPSGTDNRS GGRFLFNSPT PLTLPLPLLS QGSAAFPQRG TLQSSFAPTF RSLDEFSVDS 300 ADHHKSQVIH HPSSLFGNRF VSDGLPGFCI SPQIQNNGAP HDVVSARPSS SASLSNGR*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MGMKSTEGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKAAID KLAELPPWQP NSSSVPSTST APDSAAHNGN SAEMAVAEES  120
ESPKYNFQLH RQISANSRNA TSQFLPPQLE NDQSMLETMK SFFPTSSAAS SINFSSYPSE  180
IMSRSTQQNQ DLGLSLHSLQ SQSALIHQSD PQENEMSQTL FSTSAPMVYE PGFQRMMGWG  240
TDPSGTDNRS GGRFLFNSPT PLTLPLPLLS QGSAAFPQRG TLQSSFAPTF RSLDEFSVDS  300
ADHHKSQVIH HPSSLFGNRF VSDGLPGFCI SPQIQNNGAP HDVVSARPSS SASLSNGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-22	29	82	1	54	Putative transcription factor PCF6
5zkt_B	4e-22	29	82	1	54	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K01089.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010035834.1	0.0	PREDICTED: transcription factor TCP4
TrEMBL	A0A059A1U3	0.0	A0A059A1U3_EUCGR; Uncharacterized protein
STRING	XP_010035834.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2408	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	1e-42	TCP family protein

Link Out ? help Back to Top
Phytozome	Eucgr.K01089.1.p
Entrez Gene	104424977