PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01091.5.p
Common NameEUGRSUZ_K01091
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Whirly
Protein Properties Length: 199aa    MW: 21971.2 Da    PI: 8.8116
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01091.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly2003.1e-62221582137
            Whirly   2 vyktkaalkvkavrptfealdsgn.lklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                       vyk+kaal++ +v+ptf++l+sg+ lk++r+G ++l++ +a++erkydWek+q falsate ++l++l+sk+sceffhdp++ +sn+G+vrk+
  Eucgr.K01091.5.p  22 VYKGKAALSLSPVLPTFSKLESGAgLKVDRHGVMMLRFWPAIGERKYDWEKRQLFALSATETGSLISLGSKDSCEFFHDPSMLSSNAGQVRKS 114
                       9*********************97589****************************************************************** PP

            Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                       l+++P++dG G+f++lsv+n+++k+ne+f+vPv+ aefav++++
  Eucgr.K01091.5.p 115 LSIKPHADGGGYFISLSVNNNILKTNERFTVPVTAAEFAVMKTA 158
                       ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.9E-7410178IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.3E-6514192IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.2E-5922157IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSNVLMEFAG GTINRIFAPY CVYKGKAALS LSPVLPTFSK LESGAGLKVD RHGVMMLRFW  60
PAIGERKYDW EKRQLFALSA TETGSLISLG SKDSCEFFHD PSMLSSNAGQ VRKSLSIKPH  120
ADGGGYFISL SVNNNILKTN ERFTVPVTAA EFAVMKTACS FALPHIMGWD RYTNNQRHGA  180
EESPSKVDKQ ILDLEWDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A2e-9461741168StWhy2
3n1i_A2e-9461741168protein StWhy2
3n1j_A2e-9461741168Protein StWhy2
3n1k_A2e-9461741168protein StWhy2
3n1l_A2e-9461741168protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01091.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035836.11e-141PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0341e-101WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A059A1U81e-147A0A059A1U8_EUCGR; Uncharacterized protein
STRINGXP_010035836.11e-141(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-91WHIRLY 2