PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K01103.1.p

Common Name

EUGRSUZ_K01103, LOC104424987

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 239aa MW: 26484.1 Da PI: 6.1662

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K01103.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.1	1.5e-13	64	110	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P+a kK++Ka+ L ++v+++++L Eucgr.K01103.1.p 64 KNHSEAERRRRARINAHLDTLRGLVPEA-----KKMDKAALLAEVVNHLRKL 110 58************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.961	61	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.68E-14	64	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-11	64	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-14	65	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.8E-13	67	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	7.63E-5	150	197	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.7E-6	150	196	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MDDSDFEVLS DDPRVKPGIR ALQRNGSSSY SSLVLDSERG ELVEASVSAK RKEPPAERNV 60 DALKNHSEAE RRRRARINAH LDTLRGLVPE AKKMDKAALL AEVVNHLRKL KGNAEEAMQQ 120 YVIPTDADEI KVEQERGEVV DLEFETIKAS LCCDYRPGLL SNLRRVLVDL GLIVLSAEVA 180 TLEGRMKSIM ELTSHVGDKT LCQVLSSSLR LALCSMVDQF STSEESPRPS VSDKRRRA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K01103.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010035845.1	1e-171	PREDICTED: transcription factor bHLH30
Refseq	XP_010035846.1	1e-171	PREDICTED: transcription factor bHLH30
TrEMBL	A0A059A0U6	1e-170	A0A059A0U6_EUCGR; Uncharacterized protein
STRING	XP_010035845.1	1e-171	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18594	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	3e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.K01103.1.p
Entrez Gene	104424987