PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01195.1.p
Common NameEUGRSUZ_K01195
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 29327.9 Da    PI: 9.407
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01195.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-312574150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Eucgr.K01195.1.p 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                      79***********************************************8 PP
2K-box101.98.6e-34921933100
             K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk....ekelqeen 91 
                       +s+ +s++e +++ +qqe++kL+++i+++q ++Rh+lGe++++Ls+k+L++Le++Leks++++RskKne+l+++ie++qk+    e elq++n
  Eucgr.K01195.1.p  92 SSHPQSVSEVNTQFYQQEASKLRRQIREIQVSNRHILGEGISDLSFKDLKNLESKLEKSISRVRSKKNEMLFAEIEYMQKRglvqEIELQNDN 184
                       45556699***********************9************************************************7666699****** PP

             K-box  92 kaLrkklee 100
                       ++Lr+k++e
  Eucgr.K01195.1.p 185 MYLRAKIAE 193
                       ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-411776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.2071777IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-331892IPR002100Transcription factor, MADS-box
CDDcd002659.24E-451892No hitNo description
PRINTSPR004044.9E-331939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003199.7E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-335475IPR002100Transcription factor, MADS-box
PfamPF014862.3E-25102191IPR002487Transcription factor, K-box
PROSITE profilePS5129715.401103197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEFPSEFSEA SSQKRIGGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVRG TIERYKKASS DSSHPQSVSE VNTQFYQQEA SKLRRQIREI  120
QVSNRHILGE GISDLSFKDL KNLESKLEKS ISRVRSKKNE MLFAEIEYMQ KRGLVQEIEL  180
QNDNMYLRAK IAENEGAQQQ QQQGSDHHFN MPGSSSVYEA LPSQPAYDRN FLQVNVLEPN  240
HQSYSRSDHT ALQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A3e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B3e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C3e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D3e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P3e-201889273Myocyte-specific enhancer factor 2B
1tqe_Q3e-201889273Myocyte-specific enhancer factor 2B
1tqe_R3e-201889273Myocyte-specific enhancer factor 2B
1tqe_S3e-201889273Myocyte-specific enhancer factor 2B
6c9l_A3e-201889273Myocyte-specific enhancer factor 2B
6c9l_B3e-201889273Myocyte-specific enhancer factor 2B
6c9l_C3e-201889273Myocyte-specific enhancer factor 2B
6c9l_D3e-201889273Myocyte-specific enhancer factor 2B
6c9l_E3e-201889273Myocyte-specific enhancer factor 2B
6c9l_F3e-201889273Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01195.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4657290.0AB465729.1 Eucalyptus grandis AGL mRNA for agamous-like protein, complete cds, clone: EgAGL1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289649.11e-177glycogen debranching enzyme
SwissprotQ93XH41e-120MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A059A0Z40.0A0A059A0Z4_EUCGR; Uncharacterized protein
STRINGXP_010035895.11e-178(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33412350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.21e-103MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]