PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01219.1.p
Common NameEUGRSUZ_K01219, LOC104425047
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 336aa    MW: 37458.4 Da    PI: 7.0403
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01219.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.81.1e-33188245259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnhe
  Eucgr.K01219.1.p 188 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHE 245
                       8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-35172247IPR003657WRKY domain
SuperFamilySSF1182901.83E-29180247IPR003657WRKY domain
PROSITE profilePS5081132.282182247IPR003657WRKY domain
SMARTSM007742.4E-39187246IPR003657WRKY domain
PfamPF031062.4E-26188245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSDDKNNDPF NYNHFYTPDN IGVVSPPEFR FFDDDSTNLS MFTHHQQAPH NPQALNPSPF  60
MSFTGCLRSS VDYNTLSRAF DLSCSSSEVI TPNLDEGGSS KKCSITEPAA TASENGPLSP  120
NSSVSSSSKE AAVEEDGDNS KKDEDDPKTT CNDDDDKSKK GNKPKKKEKR PREPRFAFLT  180
KSEIDHLEDG YRWRKYGQKA VKNSPYPRSY YRCTTQKCTV KKRVERSFQD PSIVITTYEG  240
QHNHECPANL RGNAAAAAAI LSPSFFASPS AIGTTFPHNL LLPQFLQMRN PSRANSSNSM  300
MFYPQTLAPQ QQQFQPPDHG LLHDMLNSVV QKKEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-271802481078Probable WRKY transcription factor 4
2lex_A2e-271802481078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01219.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035922.10.0PREDICTED: probable WRKY transcription factor 71
RefseqXP_018720202.10.0PREDICTED: probable WRKY transcription factor 71
SwissprotQ8VWJ26e-57WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A059A0X40.0A0A059A0X4_EUCGR; Uncharacterized protein
STRINGXP_010035922.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-49WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]