PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01228.2.p
Common NameEUGRSUZ_K01228, LOC104425055
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 223aa    MW: 25015.1 Da    PI: 8.0013
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01228.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.31.2e-2637855128
               NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       eke yfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s    ++ vglkktLv+y+g+a +g+ktdW+mhe+rl
  Eucgr.K01228.2.p   3 EKEGYFFCIRGRKYKNSIRPNRVTGSGFWKATGIDKPIYSGkyPHNCVGLKKTLVYYRGSAGRGTKTDWMMHEFRL 78 
                       6789************************************7555566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.5321109IPR003441NAC domain
SuperFamilySSF1019415.36E-302108IPR003441NAC domain
PfamPF023656.8E-11778IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGEKEGYFFC IRGRKYKNSI RPNRVTGSGF WKATGIDKPI YSGKYPHNCV GLKKTLVYYR  60
GSAGRGTKTD WMMHEFRLPP VEKGGDLSDA NDTVTEEAEV WTLCRIFKRI ASSRKYIATT  120
ECKETTFKQS SINSCSKSSS FESEYGDQCL SFGSDHSAVQ PSDQKPATRH VEQAQLSWVN  180
HCHSIPQAPV ATPCLSLWNL NGDDIFANGI NWDELRSIVH EE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-27111571174NAC domain-containing protein 19
3swm_B4e-27111571174NAC domain-containing protein 19
3swm_C4e-27111571174NAC domain-containing protein 19
3swm_D4e-27111571174NAC domain-containing protein 19
3swp_A4e-27111571174NAC domain-containing protein 19
3swp_B4e-27111571174NAC domain-containing protein 19
3swp_C4e-27111571174NAC domain-containing protein 19
3swp_D4e-27111571174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01228.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035934.11e-168PREDICTED: transcription factor JUNGBRUNNEN 1
TrEMBLA0A059A0011e-166A0A059A001_EUCGR; Uncharacterized protein
TrEMBLA0A059A0Z31e-167A0A059A0Z3_EUCGR; Uncharacterized protein
STRINGXP_010035934.11e-167(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.16e-59NAC domain containing protein 42