PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01251.1.p
Common NameEUGRSUZ_K01251
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 476aa    MW: 53145 Da    PI: 5.094
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01251.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.9e-08350397448
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       WT  E  +lvd++ ++G g W+ I r +      Rt+ +++++w+++l
  Eucgr.K01251.1.p 350 WTLAEVTKLVDGISEYGAGKWTDIKRLFFatsAYRTPIDLRDKWRNLL 397
                       ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-11342400IPR009057Homeodomain-like
PROSITE profilePS5129413.87342401IPR017930Myb domain
SuperFamilySSF466891.42E-15344439IPR009057Homeodomain-like
SMARTSM007176.1E-7346399IPR001005SANT/Myb domain
CDDcd116606.03E-18348398No hitNo description
PfamPF139214.9E-6350400No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MNEVKEESLV PPIEDETTEV EHLLEEPEND YFSVDGVFCS NEENAGKFLD SKDFHDEVEF  60
SLRSTSCGLD SYITPEGGDA LNLGGLEGFL DEVDDMEVLD SMDGPPIACE DYLLDMDLAQ  120
EVSALDVGLC DGLRLGNSST DSHSPGYSGS SNGAIEMSES SDGNNPELNC NDDSSQGRIG  180
PEDSNCLSRD SVKVDQLQNS PDCVVSLLSS RNKNNPAAES RLVACLTQKR QRKPTRRYIE  240
ESANMKSSHL RPEQKPFAVD SKKHVIFRTP DQLHNVESRE LISVPVKDCP EETGIKTLPH  300
PHLQGRRLKK RKPLLEDDSG EYSSASESED DFVERRPKKG IDRRKHQRMW TLAEVTKLVD  360
GISEYGAGKW TDIKRLFFAT SAYRTPIDLR DKWRNLLRAS QALKSHKGEA ETETETNEKN  420
AVRPLPKSLL HRVSELATIH PYPRSYNSRS RPVPTAKKGA RLSSNGRNVR RRVCP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305311RRLKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01251.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018721186.10.0PREDICTED: uncharacterized protein LOC104425075 isoform X1
TrEMBLA0A059A1C80.0A0A059A1C8_EUCGR; Uncharacterized protein
STRINGXP_010035961.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-22TRF-like 6