PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01361.1.p
Common NameEUGRSUZ_K01361, LOC104425180
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HB-other
Protein Properties Length: 1116aa    MW: 125218 Da    PI: 7.9766
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01361.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.64.5e-13756857
                      -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      t+ ql++Le+++ +++yp++++++  A++lgLt +qV+ WF  +R ++k+
  Eucgr.K01361.1.p  7 TPLQLRALERCYSEDQYPTQKAMKGYAASLGLTFKQVQGWFMEKRKRHKR 56
                      899*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.0E-10161IPR001356Homeobox domain
PROSITE profilePS5007113.329157IPR001356Homeobox domain
SuperFamilySSF466891.5E-11558IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-12559IPR009057Homeodomain-like
CDDcd000865.50E-12557No hitNo description
PfamPF000461.6E-10656IPR001356Homeobox domain
PROSITE profilePS5082712.255349408IPR018501DDT domain
SMARTSM005716.3E-5349408IPR018501DDT domain
PfamPF027913.3E-9352403IPR018501DDT domain
PfamPF050668.7E-8490557IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156126.9E-7628659IPR028942WHIM1 domain
PfamPF156131.2E-10759833IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1116 aa     Download sequence    Send to blast
MELKRKTPLQ LRALERCYSE DQYPTQKAMK GYAASLGLTF KQVQGWFMEK RKRHKRNGEA  60
PFSISAQDGA QSADSLPSTC GHLASTDANS REKPICLQDM LFSPDYILKK VFRKDGPVLG  120
VEFNSLPAGA FLHGSRNKLS CQQIHREPKK RKVSNGEIID GQDGFNSGLV KRHGMGKGLM  180
TVWRATNPDG GHFPTGVDIV RGAGALSKVS TSKSKKKSCQ GKINRQQTLA MIQRKIKEKS  240
SGKKKPLMKK KQKPLNQDSI PKETRKEKCD LALVGGITQE LLDKFALLVD DEEMEMRELR  300
AGPKPLCCSD HISSNGSHGC SLCKDLLAKF PPISVKMKQP FCMQPWDSLE MVKKLFKAIH  360
FLYTFAAVLD INSFTLDEFA QAFHDKDSLL LGKIHVALLK LLLLDVETEL TKGSFHHLSK  420
SCKLLALLHS VENQDMIVDF WKKSLNPLTW TEILRQVLVA AGFGSKKGTS HREAVSEEMS  480
LMMKYGMRPG TLKGELFRLL SEQGNNGLKV SEMARASQVM GLNISSNREE LENAICSMLS  540
SDITLFEKIS SSTYRLRINF ASKDAEHLQS DTDDSGSVEN LDDDVCSGGD DSECDSVDLT  600
VRKFKRANSH KSKNSMVMVD TEIDESHPGE VWLLGLMEGE YSDLSIEEKL NALVALIDLV  660
RAGSTILMEN SSQVLTETVP SSFYTGSGAK IKRASSKQQN SLGSSWVHHE QRHGHNSSAE  720
IQPIDSSALL SKLHNKQISS GKSTEAKDVE IADYPHPMQS VYLGSDRRYN RYWLFLGPCN  780
ARDPGHRSVY FESSEDGHWE IIDTKEAFCS LLSVLDDRGA REALLIESLE KRKAFIFQAM  840
SSCIVSQADV RSGILSDVTE LDSVREESSS PISDVDNGTS LITSGDSFPS SGAITIEVGE  900
KGEELKQRWS RLKAFDWWMW NFFYLALNAV RHRRKSYHDS LNRCERCHDL YWRDEKHCKI  960
CHTTFELDFD LEERYAIHAA TCREKEETDT FPKHRVLSSQ LQSLKAAIHA IESAMPEDAL  1020
IGAWTKSAHR LWVKRLRRTS SLAELLQVLA DFVSAINRDW LRQCNNVPCY NLSGEEIVAH  1080
FPIIPHTTSA VALWLVKMDM LVAPYLKTLR TDKNH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01361.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036096.10.0PREDICTED: homeobox-DDT domain protein RLT3 isoform X2
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLA0A059A2P30.0A0A059A2P3_EUCGR; Uncharacterized protein
STRINGXP_010036094.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96382125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator