PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01522.1.p
Common NameEUGRSUZ_K01522
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 231aa    MW: 24495.6 Da    PI: 5.2195
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01522.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.33.1e-3991101101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC ++C++apyf ++q ++kfa+vh +FGasnv+kll ++p ++r+da+ +++yeA+ar+ dPvyG+v++il+lqqq+++l+a
  Eucgr.K01522.1.p   9 PCGACKFLRRKCIHGCIFAPYFGSDQgAAKFAAVHMVFGASNVSKLLLHIPVNKRQDAVVTITYEAQARLADPVYGCVSTILALQQQVATLQA 101
                       7***********************9989***************************************************************** PP

            DUF260  93 elallkeel 101
                       el+l++++l
  Eucgr.K01522.1.p 102 ELSLVQTQL 110
                       *****9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.9618110IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-389107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MTAPPPGAPC GACKFLRRKC IHGCIFAPYF GSDQGAAKFA AVHMVFGASN VSKLLLHIPV  60
NKRQDAVVTI TYEAQARLAD PVYGCVSTIL ALQQQVATLQ AELSLVQTQL MSTRYAVASA  120
FQAPEMQQPQ PAAHPCHLPM LQPEYFNNSS ATSNNNFINI SSFAAAAAAA AATNNFAAAA  180
AAASSHTLEP LPQFPHPPRD EDEGEDEAEE EEEGGSHVPA IFADEIFRGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3921164115LOB family transfactor Ramosa2.1
5ly0_B1e-3921164115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01522.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036253.11e-168PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV31e-72LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A059A0U51e-167A0A059A0U5_EUCGR; Uncharacterized protein
STRINGXP_010036253.11e-168(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-48LOB domain-containing protein 20