PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01828.1.p
Common NameEUGRSUZ_K01828, LOC104425483
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 377aa    MW: 39879.7 Da    PI: 9.0671
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01828.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.63.1e-4276151176
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                       +CqvegC++dlse+k+y+ rhkvC +hska++v+v+gleqrfCqqCsrfh+l+efD++krsCrrrLa+hnerrrk+
  Eucgr.K01828.1.p  76 RCQVEGCNVDLSEVKTYYLRHKVCGTHSKAATVVVRGLEQRFCQQCSRFHQLNEFDQGKRSCRRRLAGHNERRRKP 151
                       6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-3469138IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.94174151IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-4075155IPR004333Transcription factor, SBP-box
PfamPF031101.9E-3277150IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDSRRPLNHS ASSSSSSPPT SASTDGPEIH FGDVGPGVQA KPGGSTSSRS GYLGTPPKKA  60
RGADGGGGGG AHQPPRCQVE GCNVDLSEVK TYYLRHKVCG THSKAATVVV RGLEQRFCQQ  120
CSRFHQLNEF DQGKRSCRRR LAGHNERRRK PPPGSAHYSR HSRFSSSIFD NSTGSAGLVM  180
DFSAYPGPPP REAWIAPQAS NRGPGNQTLG REKLQLHPPW QSSPESHQYN LFLQGPSPSV  240
GGTSFPGPGI PPGESFNPSC ALSLLSNQQP DSASQASGRA LNSDVLSPQA SVGAQVINPL  300
DAAVGNFSSA SWALKVNEAG GSTPDIAPDL GLGHVSQPLN GPFSSGLEFS LQSRRQNTDQ  360
DHSQDYNSTQ QRHWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-32771501184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01828.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036477.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A059A3340.0A0A059A334_EUCGR; Uncharacterized protein
STRINGXP_010036477.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21442775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-53squamosa promoter binding protein-like 9