PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01835.2.p
Common NameEUGRSUZ_K01835
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 234aa    MW: 24438.8 Da    PI: 9.6545
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01835.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-083257227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      kt+ C+ +     Ck+G++C+FaHg+
  Eucgr.K01835.2.p 32 KTRMCNKYNTAEGCKFGNKCHFAHGE 57
                      89**********************96 PP
2zf-CCCH361.2e-11200224126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ykt+lC++f + G C +G+rC+FaHg
  Eucgr.K01835.2.p 200 YKTKLCDNFVK-GSCTFGERCHFAHG 224
                       9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.4E-142861IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-82961IPR000571Zinc finger, CCCH-type
SMARTSM003560.23057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7933058IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-43257IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.17E-1595176IPR004088K Homology domain, type 1
SMARTSM003227.2E-13105175IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.2E-16106176IPR004088K Homology domain, type 1
PROSITE profilePS5008414.34106170IPR004088K Homology domain, type 1
PfamPF000135.5E-12108172IPR004088K Homology domain, type 1
CDDcd001057.17E-15108170No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-16195230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-9198230IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7199225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.352199226IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9200224IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MMNLAPAVPQ APRNMAAPPL QNGTGASQPA VKTRMCNKYN TAEGCKFGNK CHFAHGEWEL  60
GKPIAPSFDD PRSMGPITGP ITSHRLGGRM EPLPPPPGPV SSFGASATAK ISVDASLAGA  120
IIGKGGVNSK QICRQTGAKL SIRDHESNPA LRNIEFEGTF EQIKQASTMV RELIDNISAL  180
TGHSKGHGGP GGPAPPGSNY KTKLCDNFVK GSCTFGERCH FAHGAAELRK TAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01835.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036484.11e-171PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ69XQ32e-77C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A059A2Y31e-171A0A059A2Y3_EUCGR; Uncharacterized protein
STRINGXP_010036484.11e-171(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-56C3H family protein