PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K02072.1.p

Common Name

EUGRSUZ_K02072, LOC104425667

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Trihelix

Protein Properties

Length: 487aa MW: 55903.1 Da PI: 7.4431

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K02072.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.9	3.8e-30	105	190	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r+++++r++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Eucgr.K02072.1.p 105 RWPRQETLTLLEIRSRLDSRFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 190 8***********************************999*************************98..55667*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.166	98	163	IPR017877	Myb-like domain
CDD	cd12203	1.32E-20	105	170	No hit	No description
Pfam	PF13837	7.0E-21	105	191	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010197	Biological Process	polar nucleus fusion

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MEMEDHHQYT AADLRHLINA RPPPPPPHIQ SISPPELFCG GGGHRNPTQH LESMMMGGGG 60 LHNGQRQGHN HQHHHQFGRD HSSPSSVAMA GAAGGLESEN GGNGRWPRQE TLTLLEIRSR 120 LDSRFKEANQ KGPLWDEVSR IMSEEHGYQR SGKKCREKFE NLYKYYKKTK EGKAGRQDGK 180 HYRFFRQLEA LYGENANSNS ILQAPSLPHS LHFHPPPNIN DINQDASHHR HPHQLQRPCE 240 SLSLSNSSDF DTSSSDDNEE DVSVEKGKKV RRGKRGWKIK IKEFIDSQMR KLADRQEAWL 300 EKMMKALEEK ERERELREEE WKQQEMARIE REHKFWEKEK AWIEARDATF MDALQKLTGR 360 DLKFVPSPNE LLAAAEIQTH QSDGLTKWSK DFDNFKKRKD NSRWCHYPSG SDEVMYNQGG 420 SNCEIIKEQG PESMTRSVQM NNGSSSPSNS NAGNAMQESC FRFMMVEGDN LWESYGMKLT 480 KGDQNQ*

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MEMEDHHQYT AADLRHLINA RPPPPPPHIQ SISPPELFCG GGGHRNPTQH LESMMMGGGG  60
LHNGQRQGHN HQHHHQFGRD HSSPSSVAMA GAAGGLESEN GGNGRWPRQE TLTLLEIRSR  120
LDSRFKEANQ KGPLWDEVSR IMSEEHGYQR SGKKCREKFE NLYKYYKKTK EGKAGRQDGK  180
HYRFFRQLEA LYGENANSNS ILQAPSLPHS LHFHPPPNIN DINQDASHHR HPHQLQRPCE  240
SLSLSNSSDF DTSSSDDNEE DVSVEKGKKV RRGKRGWKIK IKEFIDSQMR KLADRQEAWL  300
EKMMKALEEK ERERELREEE WKQQEMARIE REHKFWEKEK AWIEARDATF MDALQKLTGR  360
DLKFVPSPNE LLAAAEIQTH QSDGLTKWSK DFDNFKKRKD NSRWCHYPSG SDEVMYNQGG  420
SNCEIIKEQG PESMTRSVQM NNGSSSPSNS NAGNAMQESC FRFMMVEGDN LWESYGMKLT  480
KGDQNQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K02072.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036725.1	0.0	PREDICTED: trihelix transcription factor PTL
Swissprot	Q9LZS0	5e-94	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A059A3H8	0.0	A0A059A3H8_EUCGR; Uncharacterized protein
STRING	XP_010036725.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	9e-63	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Eucgr.K02072.1.p
Entrez Gene	104425667

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]