PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K02085.1.p

Common Name

EUGRSUZ_K02085, LOC104425677

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 218aa MW: 24923.4 Da PI: 9.6928

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K02085.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	96.8	2.4e-30	47	134	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka+++vkk+k+gkw+vtk+ +eHnH+l Eucgr.K02085.1.p 47 FYDTYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKSRPRR-SENRKPRAITREGCKAMIVVKKDKTGKWVVTKFIKEHNHPLI 134 9*****************************************99.9*************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-28	47	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MDERPSVVED GDAIECSSGK DAPNEESSDM EPSVGMEFES EEAAKVFYDT YATHMGFIMR 60 VDAFRRSMRD GKVVWRRLVC NKEGFRKSRP RRSENRKPRA ITREGCKAMI VVKKDKTGKW 120 VVTKFIKEHN HPLIAAPANS HRSVLLSQKP DEKDVKIREL TAELQRERKR SAAYLEQLEM 180 VLRDMEEHSG RLSKSIEVIV KSVREIDSRR APVSSSQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K02085.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036738.1	1e-158	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	2e-30	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A059A3W6	1e-157	A0A059A3W6_EUCGR; Uncharacterized protein
STRING	XP_010036738.1	1e-158	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	5e-87	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.K02085.1.p
Entrez Gene	104425677

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]