PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02448.1.p
Common NameEUGRSUZ_K02448, LOC104425958
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 309aa    MW: 34624.1 Da    PI: 4.5612
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02448.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.2e-1981134356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k++++t+eq++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Eucgr.K02448.1.p  81 KKRRLTTEQVHFLEKNFELENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 134
                       56789************************************************9 PP
2HD-ZIP_I/II125.42.5e-4080170191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       ekkrrl++eqv++LE++Fe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktk+lEk+ye L+++y++lk++ + L ke+++L++e+
  Eucgr.K02448.1.p  80 EKKRRLTTEQVHFLEKNFELENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKHLEKEYEDLQASYNSLKADCDGLLKENDKLKTEV 170
                       69*************************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-1970137IPR009057Homeodomain-like
PROSITE profilePS5007117.57276136IPR001356Homeobox domain
SMARTSM003891.1E-1879140IPR001356Homeobox domain
CDDcd000865.00E-1881137No hitNo description
PfamPF000461.6E-1681134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1982143IPR009057Homeodomain-like
PRINTSPR000311.3E-5107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5116132IPR000047Helix-turn-helix motif
PfamPF021833.1E-12136177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAGGGGCEGS AIASLLQNQR VSPSSDAFFF YGSSFSVGSR SMVSFEDASG ANVSKNPFFQ  60
AFDPHEIGEE ELDEYLHQPE KKRRLTTEQV HFLEKNFELE NKLEPERKIQ LAKDLGLQPR  120
QVAIWFQNRR ARWKTKHLEK EYEDLQASYN SLKADCDGLL KENDKLKTEV LVLTDKLLIK  180
ARGTQNSKLS NASSPGPPEN PVACSKGEEE RISTVPEDVC PGKSEISDSD SPNGGYSPLR  240
EHGDSSYAFE PDLSDSSQDE DYTRNENLQH LCVFPKLEET RDDYPILSTS SCHFGFPPED  300
QASWPWPY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02448.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037142.10.0PREDICTED: homeobox-leucine zipper protein HAT5
TrEMBLA0A059A4S30.0A0A059A4S3_EUCGR; Uncharacterized protein
STRINGXP_010037142.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-35homeobox 1