PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02496.1.p
Common NameEUGRSUZ_K02496, LOC104425992
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 430aa    MW: 47383.3 Da    PI: 8.5941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02496.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16248294455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L++l+Pka      K +Ka++L +++eY+k+Lq
  Eucgr.K02496.1.p 248 IHNLSERRRRDRINQKMKALQRLVPKA-----SKTDKASMLDEVIEYLKQLQ 294
                       5*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.561244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-19247322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-14248294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-18248306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.55E-16249298No hitNo description
SMARTSM003532.2E-17250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSHCAAADWN LRQQRQEQVE GGEGSNRSTH VQIPQIHPHH HPQPHYSSSS LPSMSNHGVA  60
ELTWENGQLA MHGHGLLKPP LGGSDTLESI VHQATCHKKN PPSPRHDHPP PSSLHRVRLS  120
SSAGGILDKS HAGQQCPVNN HLIKKRKRSD SEPVPVVKKN LGNGVGRCTT RGERSSICGS  180
ASATICRDDD ATMTTWASFE SPVSFKNKTT DDDDSASHGE SENLDEDDED KGEIGPPQST  240
RRSRASTIHN LSERRRRDRI NQKMKALQRL VPKASKTDKA SMLDEVIEYL KQLQAQVQMM  300
SLRNNMPQMI LPNLAMQHQQ LQMSLLAART AGVGLGMLDV NPMAHTAAAF MPQAYMVPPL  360
VAAQHFQAQV NPEGRSNAPV LPMPDPYCAY LAQNMNMEHF NKMATLHRQQ VHQTAQACRP  420
SRSNRAEGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148KKRKRS
2252257ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02496.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037189.10.0PREDICTED: transcription factor PIF7
TrEMBLA0A059A5550.0A0A059A555_EUCGR; Uncharacterized protein
STRINGXP_010037189.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.16e-37bHLH family protein