PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02593.1.p
Common NameEUGRSUZ_K02593
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 362aa    MW: 38859.6 Da    PI: 7.8473
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02593.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.91.4e-141153345
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      i n+  + +t+ kR++ ++KKA+E  +LCd + ++ii+++tg 
  Eucgr.K02593.1.p 11 IPNEKAQRITYEKRKKNVMKKAQEFATLCDLDTCMIIYGPTGS 53
                      66888899*********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-13160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.558152IPR002100Transcription factor, MADS-box
CDDcd002664.59E-18388No hitNo description
SuperFamilySSF554554.84E-17396IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-7323IPR002100Transcription factor, MADS-box
PfamPF003196.4E-141153IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDRRKLTLGL IPNEKAQRIT YEKRKKNVMK KAQEFATLCD LDTCMIIYGP TGSATATEPE  60
VWPASPGKVK RIIERYMSEG ADRCAKRTVR LPEFFANRER KVDAELTEAL PANRKAKYPV  120
SESLIAGLSK EDLKRLLNSL GHKLEAAKAR LAVMKEDAVR TSSSYMNDRQ GSFQDPSSPD  180
GTPSFRACYN ASMVQPAHPR AALPDAGRPV PDLDNAGSFQ DHSSPEGTPS FGAGSNASMV  240
QLARPHAALG DAGRPLPDLN EACSFQDHSS PEGTPSFRAG YDASMVQPAH PRAALSDAGR  300
PVPDLNDAGS FQDHSSLEGT PSFRAGYNAS MVQPARPRDA LGDAGRPVPD LNDAGSPCII  360
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02593.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039103.10.0PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A059A5A20.0A0A059A5A2_EUCGR; Uncharacterized protein
STRINGXP_010039103.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.16e-22M-type_MADS family protein