PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02636.1.p
Common NameEUGRSUZ_K02636, LOC104427772
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CO-like
Protein Properties Length: 339aa    MW: 37622.3 Da    PI: 6.4937
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02636.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box32.71.5e-104084442
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      ++C+ +e+ ++++ Ce +   lC++C  e+H+       Ht+vp+
  Eucgr.K02636.1.p 40 WICNSCENAPASFACEADAAVLCANCDIEIHSAnmlacrHTRVPV 84
                      79*****************************6699******9986 PP
2CCT67.73.2e-23269312144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea++lRYkeKrk RkF+KkirY+ RK++A+sRpRvKGrF++++
  Eucgr.K02636.1.p 269 REAKVLRYKEKRKARKFDKKIRYALRKTYADSRPRVKGRFARRS 312
                       9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000210.00547241No hitNo description
SMARTSM003363.8E-113784IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3243784IPR000315B-box-type zinc finger
CDDcd000211.14E-84084No hitNo description
PfamPF006432.2E-84084IPR000315B-box-type zinc finger
PfamPF062036.2E-18269311IPR010402CCT domain
PROSITE profilePS5101716.628269311IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MCKAASCVFF CQSHSAFLCA GCDQIAHEGN ISDAQHERFW ICNSCENAPA SFACEADAAV  60
LCANCDIEIH SANMLACRHT RVPVTPLSSS LYGPPSSTLD QNAETEGPKA HECIEEDEIN  120
SWLLLDPPSR KGNQTSDELL YGGEADEYLD LIEYGSCTEH QALDKCNPLE TRIDKGQSTS  180
DGVVPVQLMD STAQQNVCWD NKNGIAKDAF VSNPSSNHTV SHSFFHASIS RLQTMNEISN  240
SFARIPIGTT GMFSNPPLLR PFQNPAINRE AKVLRYKEKR KARKFDKKIR YALRKTYADS  300
RPRVKGRFAR RSAAELKVDQ MFSMEDYGYG FVSCIKFC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02636.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039114.20.0PREDICTED: zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A059A4K40.0A0A059A4K4_EUCGR; Uncharacterized protein
STRINGXP_010039114.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1921777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-58CONSTANS-like 2