PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03046.1.p
Common NameEUGRSUZ_K03046, LOC104426425
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 647aa    MW: 70006.5 Da    PI: 9.5923
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82e-094424791954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Eucgr.K03046.1.p 442 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 479
                       554459******************************88 PP
2BELL112.91.7e-36309378372
              BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        e ++kk++L+s+l+eV++rYkqy++q+q+v++sFe+vagl +a+pY++lAlka+S+hF+cLk+aia+q+
  Eucgr.K03046.1.p 309 GEFRRKKSRLISMLDEVCRRYKQYCQQMQAVVASFECVAGLSNAAPYANLALKAMSKHFKCLKNAIADQL 378
                       58899***************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-55243376IPR006563POX domain
PfamPF075261.0E-40248375IPR006563POX domain
PROSITE profilePS5007112.098420483IPR001356Homeobox domain
CDDcd000864.06E-12423484No hitNo description
SMARTSM003893.4E-10423487IPR001356Homeobox domain
SuperFamilySSF466894.71E-17425490IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27426487IPR009057Homeodomain-like
PfamPF059201.2E-18440479IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MSGGFEPYHV PQQNRERQAQ SRRRPKPEPP TFLPRRTHLS QPPWVRRLAP SVRPVPLPVR  60
FVSLRRRRPT SAAATTQSPS SRKREGARNL IGFVGGGGGG GGGSSSSSAS SYLDPHSTMV  120
INPSSIGDMG SASHPLFLYA ASQGIEGNLG NLSQPYNNHN NAGGGGGEPP LSLAHDSAAG  180
NTGQGLSLSL SSHVGSTRNH HNTLPLELNL QRFGSAAVYG GKATASGGGG GYMSSPVPLG  240
PFTGYASILK GSRFLRPAQQ LLEELCEAGR AICTEKMTDD SCAMTEPAMD SLSGGCGIGM  300
DDGCGGDGGE FRRKKSRLIS MLDEVCRRYK QYCQQMQAVV ASFECVAGLS NAAPYANLAL  360
KAMSKHFKCL KNAIADQLQF TNKAFSQVSQ KRDDASRLGT EERVQYAQRA IQNSGYLEHQ  420
PVWRPQRGLP ERAVTVLRAW LFEHFLHPYP TDTDKLMLAK QTGLSRSQVS NWFINARVRL  480
WKPMVEEIHM LETQQGQKSS QREDRNVNKS IDQLPLANSF SSENPSTSAQ RLHDALPKRT  540
RSELPIAVPM RNDESLNLYH NMSSHPHVAV SESIGGVSSG VSLTLGLHQN NNGMGLSDSF  600
PVNAAQRFGI GLETTNEGYV VGSFEAQDRH FGRDVFGGQL LHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-16429487563Homeobox protein Meis2
4xrm_B2e-16429487563Homeobox protein Meis2
4xrs_A2e-16429486158Homeobox protein Meis1
4xrs_B2e-16429486158Homeobox protein Meis1
5bng_A2e-16429487159Homeobox protein Meis2
5bng_B2e-16429487159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03046.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037785.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-110BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A059A8440.0A0A059A844_EUCGR; Uncharacterized protein
STRINGXP_010037785.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56882746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-104TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]