PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03118.1.p
Common NameEUGRSUZ_K03118, LOC104427891
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 622aa    MW: 71151 Da    PI: 9.1719
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03118.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.23.3e-1072506192374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cA+av+s+d++ a+alL++++++asp g+ +qRla+yf+++ +arla+++s++y+ l   +t+    ++ l+a++l+  ++P+ + s
  Eucgr.K03118.1.p 250 RTLLIQCAQAVASNDHRSANALLNEIRKHASPFGNGTQRLAHYFANGPEARLAGTGSQIYRGLINGKTT---AADMLNAYQLYLAACPFQRYS 339
                       689***********************************************************9888777...89******************* PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                         +    Il+ v+ + ++HiiDf+i +G+QWpaL+q L++Rp + p+lRiTg++ p++g   +e+++etg+rLa++Ae+++vpf++n+ +akr
  Eucgr.K03118.1.p 340 DAVPIFSILDTVADKMKIHIIDFGILYGFQWPALIQRLSQRPCP-PKLRITGIDFPQPGfrPAERVKETGQRLANYAESFNVPFKYNA-IAKR 430
                       *****************************************876.9************9*****************************.7*** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       +e +eleeL+++++E+++Vn++++ ++l+de+ + es rd vL+l+++ +P+++++   +  hn++ F++rf eal+++s+lfd+l++ +p e
  Eucgr.K03118.1.p 431 WEFIELEELKIDRDEVTIVNCMFRFKNLFDETIAEESSRDIVLNLIRRAQPDLFIHGVINGTHNAPFFVTRFREALHHFSSLFDMLDTIVPGE 523
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       ++er+ +E+ + gre+ + +aceg er+er+e++++W+ r ++aGF +vpls ++a  +   ++  + + + v+e  ++l+lgWk+r L+++S
  Eucgr.K03118.1.p 524 NQERMLIEKDMSGREALDTIACEGWERVERQESYKQWQLRNMRAGFVQVPLSRRVARFVINNIALRYHKDFVVDEVGKWLLLGWKGRFLYAFS 616
                       ******************************************************9998887777777677*********************** PP

              GRAS 372 aWr 374
                        W+
  Eucgr.K03118.1.p 617 TWK 619
                       **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.963223599IPR005202Transcription factor GRAS
PfamPF035141.1E-104250619IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MEEDIEEKTC MLQDSSDPLS AEKSFYEVLG KKYPPSPETS RTNCITYNDK HSNDSLSDST  60
RYTSTIGSRK TGYYANIGRV QNPSNYGTMS FEKDISPAAF QTNRGCNAQR LDLWGDSQFV  120
RQFRMWIEES SKFLPNQAPT KLLPLKPKRK IDKRDRLGAS ERKESLHREE GNPEEKSSKQ  180
AFVHEESVLH SDAFDVVLLS CQGEGLVRLM NLRASLKNGV NEIEHKIQEP KVGRGRGKKK  240
RGKVEVVDVR TLLIQCAQAV ASNDHRSANA LLNEIRKHAS PFGNGTQRLA HYFANGPEAR  300
LAGTGSQIYR GLINGKTTAA DMLNAYQLYL AACPFQRYSD AVPIFSILDT VADKMKIHII  360
DFGILYGFQW PALIQRLSQR PCPPKLRITG IDFPQPGFRP AERVKETGQR LANYAESFNV  420
PFKYNAIAKR WEFIELEELK IDRDEVTIVN CMFRFKNLFD ETIAEESSRD IVLNLIRRAQ  480
PDLFIHGVIN GTHNAPFFVT RFREALHHFS SLFDMLDTIV PGENQERMLI EKDMSGREAL  540
DTIACEGWER VERQESYKQW QLRNMRAGFV QVPLSRRVAR FVINNIALRY HKDFVVDEVG  600
KWLLLGWKGR FLYAFSTWKL A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-432536198375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03118.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039208.10.0PREDICTED: scarecrow-like protein 9
TrEMBLA0A059A8A40.0A0A059A8A4_EUCGR; Uncharacterized protein
STRINGXP_010039204.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein