PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03126.1.p
Common NameEUGRSUZ_K03126, LOC104426461
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 621aa    MW: 70958.9 Da    PI: 9.3772
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03126.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.56.1e-1112496182374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cA+a++s+d++ a+alL++++++asp g+ +qRla+yf+++L+arla+++s++y+ l  ++t+    ++ l+a++l+  ++P+ + s
  Eucgr.K03126.1.p 249 RTLLIQCAQAIASNDHRSANALLNEIRKHASPFGNGTQRLAHYFANGLEARLAGTGSQIYRGLINRKTT---AADMLNAYQLYLAACPFQRYS 338
                       689************************************************************999998...9******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       + +    Il+ v+ + ++H+iDf+i +G+ Wp+L+q L++Rp + p+lRiTg++ p++g   +e+++etg+rLa++Ae+++vpfe+n+ +akr
  Eucgr.K03126.1.p 339 NAVSIFSILDTVADKMKIHVIDFGILYGFRWPSLIQHLSQRPCP-PKLRITGIDLPQPGfrPAERVKETGQRLANYAESFNVPFEYNA-IAKR 429
                       *****************************************876.9************9*****************************.7*** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       +e +eleeL+++++E ++Vn++++ ++l+de+ + es rd vL+l+++ +P+++++   +  hn++ F++rf eal+++s+lfd+l++ +pre
  Eucgr.K03126.1.p 430 WELIELEELKIDRDELTIVNCMFRFENLFDETIAEESSRDIVLNLIRRAQPDLFIHGVINGTHNAPFFVTRFREALHHFSSLFDMLDTIVPRE 522
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa.klllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       ++er+ +E+ +lgre+ n +aceg er+er e++++W+ r ++aGF +vpl+ ++a+ + + + ++++ + + v+e  ++l++gWk+r L+++
  Eucgr.K03126.1.p 523 NQERMLIEKDMLGREALNTIACEGWERVERPESYKQWQLRNMRAGFVQVPLGRRVAQFViNNIASRYH-KDFVVDEVGKWLLIGWKGRFLYAF 614
                       ****************************************************9988765155566666.55********************** PP

              GRAS 371 SaWr 374
                       S W+
  Eucgr.K03126.1.p 615 STWK 618
                       ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.854222598IPR005202Transcription factor GRAS
PfamPF035142.1E-108249618IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MEEDIEEKTC MLQDSSDLLS AEKSFYEVLG KKYPPSPEPS RTNCITYNDK HSNDSLLDST  60
RYTSTIGCRK TGYYANIGRV QNPSNYVTSF EKDISPAAFQ PNRGGNAQRL DLWGECQFVR  120
QFRMGIEESS KFLPNQAPTK LLPLKPNRKI DKRDRLGASK RKESLHREEG NTGERSSKQA  180
FVHEESVLRS DAFDIVLLTG QGEGLARLMN LRASLKNGVN KIEHKIQELK AGRGRGKEKR  240
GKVEVVDVRT LLIQCAQAIA SNDHRSANAL LNEIRKHASP FGNGTQRLAH YFANGLEARL  300
AGTGSQIYRG LINRKTTAAD MLNAYQLYLA ACPFQRYSNA VSIFSILDTV ADKMKIHVID  360
FGILYGFRWP SLIQHLSQRP CPPKLRITGI DLPQPGFRPA ERVKETGQRL ANYAESFNVP  420
FEYNAIAKRW ELIELEELKI DRDELTIVNC MFRFENLFDE TIAEESSRDI VLNLIRRAQP  480
DLFIHGVING THNAPFFVTR FREALHHFSS LFDMLDTIVP RENQERMLIE KDMLGREALN  540
TIACEGWERV ERPESYKQWQ LRNMRAGFVQ VPLGRRVAQF VINNIASRYH KDFVVDEVGK  600
WLLIGWKGRF LYAFSTWKLA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-452526188375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03126.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018721242.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_018721244.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059A8A90.0A0A059A8A9_EUCGR; Uncharacterized protein
STRINGXP_010037825.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein