PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03128.1.p
Common NameEUGRSUZ_K03128
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 691aa    MW: 78619.1 Da    PI: 7.4082
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03128.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.35.2e-1133196882374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cA+av+s+d++ ++alL+ ++++asp g+ +qRla+yf+ +L+arla+++s++y+ l  ++t+    ++ l+a++l+  ++P+ + s
  Eucgr.K03128.1.p 319 RTLLMRCAQAVASNDHSSTNALLNAIRKHASPFGNGTQRLAHYFADGLEARLAGTGSQIYRGLVNKKTT---AADMLNAYQLYLAACPFQRTS 408
                       689************************************************************999999...9******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++ N++Il+ v+ +  +H+iDf+i +G+QWp+L+q L+ Rp +  +lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfe+n+ +a+r
  Eucgr.K03128.1.p 409 NFVSNKTILDTVADKMSIHVIDFGILYGFQWPTLIQHLSRRPCP-TKLRITGIDLPQPGfrPAERVEETGRRLANYAESFNVPFEYNA-IATR 499
                       ****************************************9865.79***********9*****************************.7*** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       +e ++leeL+++++E+++Vn++++ ++l+de+ + es rd vL+l+++ +P+++++   +  hn++ F++rf eal+++s+lf++l++ +pre
  Eucgr.K03128.1.p 500 WELIKLEELKIDRDEVTIVNCMYRFKNLFDETITEESSRDIVLNLIRRAQPDLFIHGVINGTHNAPFFVTRFREALHHFSSLFNMLDSVIPRE 592
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak.qaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       s+er+ +E+ ++gre+ n +aceg er+er et+++W++r ++aGF +vpl+ +++   +k +++ ++ +++ v+e +++l+lgWk+r + ++
  Eucgr.K03128.1.p 593 SQERMLIEKDMFGREALNSIACEGWERVERPETYKQWQSRNMRAGFVQVPLGRNVVRfAIKQIVSSYH-KEFLVDEVHKWLLLGWKGRFICAL 684
                       ****************************************************9987626788999998.55********************** PP

              GRAS 371 SaWr 374
                       S W+
  Eucgr.K03128.1.p 685 STWK 688
                       ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.699292668IPR005202Transcription factor GRAS
PfamPF035141.8E-110319688IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MDPLMGALYP SNGLRPDDQS ISAVVDHCLA SRPTFQSAPD RCGEMHHLVD VAPFSNDCRD  60
APYTEETEFS DAVFEYISRI LMEEDIEEKT YMLQDSLDLL SAEKSFYEVL GKKYPPSPEP  120
SHANCITYMD KHSNDSFLNN TRYTSTNGSR KNGYFADNGW VQNPCTYGTS SFERDISPAA  180
FQPNRAGNSE MLDLCRESQF VRQFRMGVEE SSKFLPNQAT TKLLYPEEID KADRLGALKR  240
KESLHWEEGN MEERSSKQAF VHQESILRSE TFDVVLLSSS QGEGLARLLS LRASLKNGPK  300
GGRGRGKKKR GKVEVVDVRT LLMRCAQAVA SNDHSSTNAL LNAIRKHASP FGNGTQRLAH  360
YFADGLEARL AGTGSQIYRG LVNKKTTAAD MLNAYQLYLA ACPFQRTSNF VSNKTILDTV  420
ADKMSIHVID FGILYGFQWP TLIQHLSRRP CPTKLRITGI DLPQPGFRPA ERVEETGRRL  480
ANYAESFNVP FEYNAIATRW ELIKLEELKI DRDEVTIVNC MYRFKNLFDE TITEESSRDI  540
VLNLIRRAQP DLFIHGVING THNAPFFVTR FREALHHFSS LFNMLDSVIP RESQERMLIE  600
KDMFGREALN SIACEGWERV ERPETYKQWQ SRNMRAGFVQ VPLGRNVVRF AIKQIVSSYH  660
KEFLVDEVHK WLLLGWKGRF ICALSTWKPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-483226888375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03128.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037828.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059A6810.0A0A059A681_EUCGR; Uncharacterized protein
STRINGXP_010037828.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein