PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03266.1.p
Common NameEUGRSUZ_K03266, LOC104426578
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 241aa    MW: 26757.7 Da    PI: 5.724
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03266.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76.1e-1896146255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr ++ +g+++AeIrd +    +  r++lg+f+++e Aa a+++a+ +++g
  Eucgr.K03266.1.p  96 SYRGVRKRP-WGKYAAEIRDSTR---HgIRVWLGTFDSPEAAAMAYDQAAFSMRG 146
                       69*******.**********422...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.74E-1995155No hitNo description
Gene3DG3DSA:3.30.730.101.6E-2996155IPR001471AP2/ERF domain
PfamPF008476.4E-1396146IPR001471AP2/ERF domain
PROSITE profilePS5103222.69596154IPR001471AP2/ERF domain
SMARTSM003806.1E-3796160IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-2296156IPR016177DNA-binding domain
PRINTSPR003678.0E-1397108IPR001471AP2/ERF domain
PRINTSPR003678.0E-13136156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQSCFFQYQT QEISTESSLN CGVFNHDMLP FNFNDSEEML LLNLLAASGV KESSESLSSN  60
GSKFKEEEVT SSTCSTDDSQ QPGQEANANH QEKEKSYRGV RKRPWGKYAA EIRDSTRHGI  120
RVWLGTFDSP EAAAMAYDQA AFSMRGSMAV LNFPVERVRE SLREMKYSCE EGCSPVVALK  180
RRHCLRRKSA SSAAAARKRR EKEVAAPASN LVVFEDLGPE YLEELLSTSE SNGSPASSHW  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2981156374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185199RRKSASSAAAARKRR
2196201RKRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03266.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037983.11e-179PREDICTED: ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y93e-69ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A059A8T41e-178A0A059A8T4_EUCGR; Uncharacterized protein
STRINGXP_010037983.11e-179(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-57ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]