PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03293.1.p
Common NameEUGRSUZ_K03293
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 477aa    MW: 52462 Da    PI: 6.8454
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03293.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13362408455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Eucgr.K03293.1.p 362 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYINDLQ 408
                       799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.7E-4251234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.028358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-15361412No hitNo description
SuperFamilySSF474599.16E-19361428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10362408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-18362422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MWKQKMGEKF WANEDDKRVV ESVVGREACE LLISSGNAAS DVTLPGDLGV QQGLAQLVEG  60
SNWNYAVFWH SASLRSGRIT LIWGDGHCCD PKVGSAEDGS SHQNVKSDRV EKKEELNKLV  120
LQKFHSSFGG SSDDNFAARL NGVSDVEMFY LSSMYFSFQS DSAYGPMGSL KANRVIWASD  180
APTCLDHYQS RSFLAKSAGF QTVAFVPLKN GVVELGSVKV IPEEQKVVEM VRTLLGGPAS  240
NKTKVLPKIF GQELSLGGVK PQSVTINFSP KVEDDPMFPS ETFDAQRVDS NQFHGGTSNG  300
YPSDNEAKLF SHSNQIVIGG FSPQTRMSGL EQHKDESSHH ADDRKPRKRG RKPANGREEP  360
LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA ITYINDLQTK IKVLETEKDM  420
VNGTHNPQLV PDVQVAPECD VSMKDGGNEV MHTFSIRTQV GGAEQLKEKL VAALSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-30356418264Transcription factor MYC2
5gnj_B8e-30356418264Transcription factor MYC2
5gnj_E8e-30356418264Transcription factor MYC2
5gnj_F8e-30356418264Transcription factor MYC2
5gnj_G8e-30356418264Transcription factor MYC2
5gnj_I8e-30356418264Transcription factor MYC2
5gnj_M8e-30356418264Transcription factor MYC2
5gnj_N8e-30356418264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343351RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03293.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038016.10.0PREDICTED: transcription factor bHLH3
SwissprotA0A3Q7H2161e-148MTB3_SOLLC; Transcription factor MTB3
SwissprotO234871e-148BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A059A6S50.0A0A059A6S5_EUCGR; Uncharacterized protein
STRINGXP_010038016.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-136bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  4. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  5. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  7. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]