PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03484.1.p
Common NameEUGRSUZ_K034841
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 641aa    MW: 72813.3 Da    PI: 5.9575
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03484.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06379403226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       k++ C+ff     C+ Gd+C+F+H+
  Eucgr.K03484.1.p 379 KRPMCKFFGTLQGCRNGDSCSFSHD 403
                       899*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1350376IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.991350375IPR000571Zinc finger, CCCH-type
SMARTSM003560.25377404IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314377405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4379403IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5383403IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MHIHEKEPDI EKSILIFLPT YGARVQQWHL LKSLNSLFKV ILHDIIDTEQ ALLDMKIWKS  60
HRKDALDLLV HMGALQTSHR GRLEPTFYGH LLASFSLSFD ASLLIVKFGE VGLLHEGILL  120
GVLMDTQPRP IIHYFGEDDL FTKNLDSYFS RDTNKPPIGP LKEVILMANL GAFKFWQRIF  180
KDKYRTKHLN QVLQSDDMKA TEKMVVEAEE EWCFFHDLEQ PSLNHVAEKY EDVLSSLHRF  240
RPNFLGASDG FPSYYCPRDF QHKCLLECLP NENEDEDEDE DAAGLDDEEL NVSVYTRECV  300
ARPFVAPNDF KTKNVADKLT AVVKEMKAHY FGLAPGDQPK SSCESCFAFN NGGKLCRPFL  360
KGSSNRGSNC SFSHSFRAKR PMCKFFGTLQ GCRNGDSCSF SHDLGTSFSS VTKPSSCIPE  420
NGNADPALLI RLFPFADDGN ILILDDINFH FTSNIARIYD PLRMVATTRL LESSISEPSL  480
TDVKIMWGLH HPYQTIIGKA PESQVLWKSV KCVLWFPDFE ICGCGKNLEG QRSFIKNFFE  540
YLAIRLLADA SCEVPVILTM NNLRFSNLQA EKLGRSCFFF LTQSFPFAEK SFGELADVIP  600
TEKLMEVSKP ISYVFRMYPP VDIESDDFQA AIQKCLHDVQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03484.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038214.10.0PREDICTED: DExH-box ATP-dependent RNA helicase DExH8
RefseqXP_018720763.10.0PREDICTED: DExH-box ATP-dependent RNA helicase DExH8
TrEMBLA0A059A7H90.0A0A059A7H9_EUCGR; Uncharacterized protein
STRINGXP_010038214.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM896523