PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03485.1.p
Common NameEUGRSUZ_K03485
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 832aa    MW: 94433.1 Da    PI: 6.3808
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03485.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.9e-09543566226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++lCr+f++ G C++G++C+F+H+
  Eucgr.K03485.1.p 543 GRKLCRHFLK-GSCNRGSNCSFSHS 566
                       689*******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.36E-2059268IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.7E-571209IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5010316.727541568IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5541567IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6541566IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-7543566IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5545567IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751569596IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037569595IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5574597IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MKSSCLSKTV GKSDVRIMVL CFFFGCDNVT KLLGISSESL SVKYCNGESP STANADFEPE  60
VHTLIHDLVM HIHENEPDIE KSILIFLPTN RSRGQQWRLL KSSSSSFKVI FHDSVDTEQA  120
LWHKKIWKSH RKIILAVESS VTIPEVAFII DSCRTVQVSW DGNRKCEFSG LTWVSKSQAE  180
QRIGRTGRTC DGEIYRLVTR SFFSDLEDYE CPTMLRLRLQ RQILLICCAE LEAINDPRVL  240
LQKALDPPDP DVVQDALDLL VHMGALQTSH RGRLEPTFYG RLLASFSLSF DASLLIIKFG  300
EVGLLHEGIL LGVLMDMQPR PIIHFFGEDD LFTKYLDSYL SRDNRKPAFG PLTEVILMVN  360
MCAFKFWQRI FKDKYRTKHL NQVLQFDDMK ATEKMVLETE EDWCFFHNLS QPSLNHVAEI  420
YEDVLSSLHR FRPNFLGTSE GFPSYNYPCD FQHKCLLECP PNEDEDEDEN EDAAGLDDGK  480
LNSSADTREC VALPFVAPND FQTKNVAGTL TTVVKEIKAH YVGLAPGDQP ESSSRSRFSV  540
KNGRKLCRHF LKGSCNRGSN CSFSHSFQAK KPACKFFTSL KGCRNGDSCF FSHDLGTPFS  600
SVTKPSSCIP ENGDADPALL IRLFPFADEG NILILDDTNF HFTSNIARSY DPLRMVATTR  660
LIESSISHPS LTDVKIMWGL HHPYQTIIGK SVESRVLWKS VKCVLWFPDF EICGYGKNLE  720
GQRSFMKNFF EYLAIRLLAD ALCEMPVILT MNNLRFSNLQ VEKLGRSCFF FLTESFPFAE  780
QSFGELAHVI PTQKLMEVSK PISYVFRMYP PADIESDDFQ AAIKKCLHDV Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n8u_A9e-2065276409626CG9323, isoform A
5n8u_B9e-2065276409626CG9323, isoform A
5n8z_A9e-2065276409626CG9323, isoform A
5n8z_B9e-2065276409626CG9323, isoform A
5n90_A9e-2065276409626CG9323, isoform A
5n90_B9e-2065276409626CG9323, isoform A
5n94_A9e-2065276409626CG9323, isoform A
5n94_B9e-2065276409626CG9323, isoform A
5n96_A9e-2065276409626CG9323, isoform A
5n96_B9e-2065276409626CG9323, isoform A
5n98_A9e-2065276409626CG9323, isoform A
5n98_B9e-2065276409626CG9323, isoform A
5n9a_A9e-2065276409626CG9323, isoform A
5n9a_B9e-2065276409626CG9323, isoform A
5n9d_A9e-2065276409626CG9323, isoform A
5n9d_B9e-2065276409626CG9323, isoform A
5n9e_A9e-2065276409626CG9323, isoform A
5n9e_B9e-2065276409626CG9323, isoform A
5n9f_A9e-2065276409626CG9323, isoform A
5n9f_B9e-2065276409626CG9323, isoform A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03485.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038212.10.0PREDICTED: DExH-box ATP-dependent RNA helicase DExH8
SwissprotO222430.0C3H31_ARATH; DExH-box ATP-dependent RNA helicase DExH8
TrEMBLA0A059A8900.0A0A059A890_EUCGR; Uncharacterized protein
STRINGXP_010038212.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM896523
Publications ? help Back to Top
  1. Xu R,Zhang S,Huang J,Zheng C
    Genome-wide comparative in silico analysis of the RNA helicase gene family in Zea mays and Glycine max: a comparison with Arabidopsis and Oryza sativa.
    PLoS ONE, 2013. 8(11): p. e78982
    [PMID:24265739]