PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03522.1.p
Common NameEUGRSUZ_K03522, LOC104426798
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 751aa    MW: 85439.6 Da    PI: 7.351
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03522.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1644.2e-2060153190
              FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 
                       +fY+++Ak+ GFs+r+++++ +    + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w++t +++ HnHel
  Eucgr.K03522.1.p  60 EFYCSFAKQFGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQIKPSDDGKLQRNRKSSRCGCQAFMRIVKRAdfdIPEWRITGFSNIHNHEL 152
                       6***************999887455667********************9*******************99887676689*************9 PP

              FAR1  90 a 90 
                        
  Eucgr.K03522.1.p 153 L 153
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1760153IPR004330FAR1 DNA binding domain
PfamPF105517.6E-23276368IPR018289MULE transposase domain
PROSITE profilePS5096610.014552588IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-8559585IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-6563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MMSELTSVMK ETSDNNTDSS PNDFGTIEES PEETILSRQT SINLVPFIGQ RFVSQDAAYE  60
FYCSFAKQFG FSIRRHRTRG KDGVGRGITR RDFTCHRGGY PQIKPSDDGK LQRNRKSSRC  120
GCQAFMRIVK RADFDIPEWR ITGFSNIHNH ELLKSNDMQL LPAYCTMSPD DKSRICMYAK  180
AGMSVRQMLR LMELEKGVKL GCLPFTEIDV RNLLRSFRPV DRDNDAIDLL KMCKDKKDKD  240
PNFKYNFQLD ANNRLEYIAW SYASSIRSYE AFGDAVVFDT THRLEAYDMI LGIWVGVDNH  300
GMNCFFGCVL LRDENVQSFS WALKTFLGFM NGKAPGTILT DQNMWLKEAV ADQIPKTKHA  360
FCIRHIVAKF SDWFSVLLGP RYDKWKTDFH QLYNLHSVED FEGEWSKMVS MYGLHGNKHI  420
NSLYALRMFW ALPYLRSYFC AGMTNAIQSE AVSAYIQRIL SAQSNLENLV EQVAAIVELK  480
DEAGAKQKLQ RKIRKVTLKT GSPIESHAAS ILTPYAFTKL QEELVSAPQF ASLMVDENYF  540
IVRHHTQLNG GYKVIWIPQD EFISCSCCQF EFSGILCRHI LRVLSNNNCF HIPDRYLPLR  600
WCGAKSSVRT SGEYAGKVQL LRSMVASLIS EPFESEEFLD VACDQIGAAL SRIKEFSGNP  660
HETDEIGYNS PPESLILPEV EESVHGFAVG NPHESIPTGK MKERRTRDGM DLYRKRRRCS  720
VPCCGLLGHD TAECPMMQGD DLNGDGLGFL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713717RKRRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03522.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038262.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
RefseqXP_010038263.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
RefseqXP_018721209.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A059A9P20.0A0A059A9P2_EUCGR; Uncharacterized protein
STRINGXP_010038260.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]