PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03592.1.p
Common NameEUGRSUZ_K03592
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 534aa    MW: 58010 Da    PI: 6.7903
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03592.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.31e-16329375455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Eucgr.K03592.1.p 329 VHNLSERRRRDRINEKMKALQELIPHC-----NKSDKASMLDEAIEYLKSLQ 375
                       6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.05E-17321379No hitNo description
SuperFamilySSF474593.27E-21322391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.247325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-22329383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-14329375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-18331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MLVSFFSSFS SGAAAAVRAG DEIAELLWQN GPVVMQSQRS VKKSEPSGCD GYQLSAIQSQ  60
TQHQHQHQHQ HQQQQQQQQQ QQQQEREQEQ QQQHLFMQED EMASWLHYPL NDASFVADFC  120
SDLLYPPPCA NVNVAATAAR ASPVVAELRQ QPPPKPPTPM APPRRFENFG HFSRLNRPRV  180
DESGPSNSSR AGNESTVVDS SGTPAVGPRS RVSEALHCDV SRGTVDGGAA ALATSSADGG  240
GREMGTCELT VTSSPGASSA CAEPLPPRKS SSTPPPPAED RKRKGIEIDP DADPDADECH  300
SEDVELESAD TKKPARGSTS SKRSRAAEVH NLSERRRRDR INEKMKALQE LIPHCNKSDK  360
ASMLDEAIEY LKSLQMQVQM MSMGCGVVPM MFPGVHQYVP HMGMGIGMAM GMDMGMNRPI  420
LPFPNILSGS ALPTPAAGAH LGPRFPMPTF HMPHVRAPDP SRISPTIQSN PLLSSLALQS  480
QNQARVPNFI DPYQQYFGLR HMQLPLQQNQ TPSGSSKPST SKVGENLEKP PSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333338ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03592.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038342.10.0PREDICTED: transcription factor PIF1 isoform X2
TrEMBLA0A059A8J00.0A0A059A8J0_EUCGR; Uncharacterized protein
STRINGXP_010038341.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.39e-67phytochrome interacting factor 3-like 5