PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.L00494.1.p

Common Name

EUGRSUZ_L00494

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HD-ZIP

Protein Properties

Length: 91aa MW: 10392.5 Da PI: 8.2407

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.L00494.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	40	91	2	53
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 rk+ ++++eq +Lee F+++++++ +++ LAk+l+L+ +qV vWFqNrRa Eucgr.L00494.1.p 40 RKKLRLSREQSLVLEETFKEHNTLNPKQKLALAKQLNLSPKQVEVWFQNRRA 91 788899*********************************************8 PP
2	HD-ZIP_I/II	76.8	3.6e-25	40	91	1	52
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA 52 +kk+rls+eq+ +LEe+F+e+++L+p++K +la++L+l+p+qv+vWFqnrRA Eucgr.L00494.1.p 40 RKKLRLSREQSLVLEETFKEHNTLNPKQKLALAKQLNLSPKQVEVWFQNRRA 91 69*************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-18	23	91	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-18	25	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.649	36	91	IPR001356	Homeobox domain
SMART	SM00389	3.1E-9	38	91	IPR001356	Homeobox domain
Pfam	PF00046	6.8E-16	40	91	IPR001356	Homeobox domain
CDD	cd00086	5.09E-14	40	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
SISGKRSERD PHGENEVEAE RTSCSCESIE EDGSRGDGAR KKLRLSREQS LVLEETFKEH 60 NTLNPKQKLA LAKQLNLSPK QVEVWFQNRR A

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.L00494.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056406.1	7e-56	PREDICTED: homeobox-leucine zipper protein ATHB-4
Swissprot	P46602	2e-28	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A058ZWH5	3e-59	A0A058ZWH5_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010056406.1	3e-55	(Eucalyptus grandis)
STRING	XP_010066089.1	3e-57	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2577	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	3e-18	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Eucgr.L00494.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]