PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L00754.1.p
Common NameEUGRSUZ_L00754
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 135aa    MW: 14814 Da    PI: 8.4973
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L00754.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.21.4e-386105199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +Ca+C +lrrkC++dC+lapyfp+++p++fa+vhk+FGasnv+k+l+ +++      +++++ yeA ar++dPvyG+vg+i++lqqq+ q ++
  Eucgr.L00754.1.p   6 RCAGCNYLRRKCPQDCILAPYFPSSNPQRFACVHKIFGASNVTKMLQVTSPGAfTGGTAECISYEATARVQDPVYGCVGIITQLQQQITQIHS 98 
                       6************************************************9999899************************************* PP

            DUF260  93 elallke 99 
                       e+ ++k 
  Eucgr.L00754.1.p  99 EIMKIKG 105
                       9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.6115107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-366103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MSSFSRCAGC NYLRRKCPQD CILAPYFPSS NPQRFACVHK IFGASNVTKM LQVTSPGAFT  60
GGTAECISYE ATARVQDPVY GCVGIITQLQ QQITQIHSEI MKIKGEMVSS HTNLTRNCTE  120
NPQHRLNMHL APTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-32711612113LOB family transfactor Ramosa2.1
5ly0_B9e-32711612113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L00754.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018719836.11e-54PREDICTED: LOB domain-containing protein 23-like
SwissprotP594686e-38LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A058ZVQ73e-96A0A058ZVQ7_EUCGR; Uncharacterized protein
STRINGAquca_018_00023.15e-43(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.16e-36LOB domain-containing protein 24