PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.L01041.1.p

Common Name

EUGRSUZ_L01041

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 240aa MW: 26805.6 Da PI: 9.2064

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.L01041.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00075	91	106	1	16
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 +kC++C+ks+s+k n+ Eucgr.L01041.1.p 91 FKCKKCNKSYSSKNNF 106 89**********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF53335	7.99E-13	138	237	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	9.1E-12	153	238	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
CDD	cd02440	0.00121	173	236	No hit	No description
Pfam	PF13649	9.0E-8	174	237	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MASSSMHQLS FARHPLLPRT CRLQPRPRFS SVRFPPFSVR ASSAVAVELD TGTQKDPTLD 60 GEIFSCPICY EPLIRRGPSG LNLEAVYRSG FKCKKCNKSY SSKNNFLDLT LTAGLRDYVE 120 VKPARTELFR SPVVSFLYER GWRQNFNQSG FPGQDEEFKM AQEYFKPAEG GLLVDVSCGS 180 GLFSRKFAKS GTYSGVIALD YSENMLRQCY DFIKQDDAVL KANLALVRAD VSRLPFSST*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.L01041.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010040339.1	1e-177	PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic isoform X3
Swissprot	Q0WPT7	1e-100	Y2104_ARATH; Uncharacterized methyltransferase At2g41040, chloroplastic
TrEMBL	A0A058ZU16	1e-176	A0A058ZU16_EUCGR; Uncharacterized protein
STRING	XP_010040339.1	1e-176	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24258	2	4

Link Out ? help Back to Top
Phytozome	Eucgr.L01041.1.p

Publications ? help Back to Top
Vidi PA, et al. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. J. Biol. Chem., 2006. 281(16): p. 11225-34 [PMID:16414959] Ytterberg AJ,Peltier JB,van Wijk KJ Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. Plant Physiol., 2006. 140(3): p. 984-97 [PMID:16461379] Lundquist PK, et al. The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis. Plant Physiol., 2012. 158(3): p. 1172-92 [PMID:22274653]