PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.L01064.1.p

Common Name

EUGRSUZ_L01064

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Nin-like

Protein Properties

Length: 188aa MW: 21832.1 Da PI: 8.7691

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.L01064.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	63	5.1e-20	95	141	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 +++l d+ yF+lpi++A L +c+T++K+iCR+ G+ RWP+Rki+ Eucgr.L01064.1.p 95 KMTLADVGGYFHLPIEKAFERLHLCPTIVKKICRKGGVGRWPYRKIQ 141 7999******************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.255	83	163	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-17	95	141	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MVSHAILDTQ HNPGAVPSNG EDRYQMFDFC KKSIQNVKDF LQQYCEGRRL AGYIMYQDPL 60 AMFYEAVCVG IDFNGNVNAD YFQLPLPPTR ERAGKMTLAD VGGYFHLPIE KAFERLHLCP 120 TIVKKICRKG GVGRWPYRKI QCIERKILEL REQLKREDEP KRSRTQAEID EWQRNLDKIR 180 YGVARTD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.L01064.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018718902.1	1e-115	PREDICTED: protein RKD5 isoform X2
TrEMBL	A0A058ZV01	1e-138	A0A058ZV01_EUCGR; Uncharacterized protein
STRING	XP_010024146.1	1e-131	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-09	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Eucgr.L01064.1.p